| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX574455 |
Definition |
Mycobacterium phage Pomar16, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52833 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
93 |
%GC |
63.42 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AOQ27848.1 | KX574455_p11 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9200 | 10657 |
| AOQ27877.1 | KX574455_p40 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29014 | 29220 |
| AOQ27927.1 | KX574455_p90 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 50297 | 50461 |
| AOQ27863.1 | KX574455_p26 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20090 | 21880 |
| AOQ27869.1 | KX574455_p32 | integrase | phrog_1 | integrase | integration and excision | -1 | 25391 | 26461 |
| AOQ27865.1 | KX574455_p28 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 22337 | 22603 |
| AOQ27878.1 | KX574455_p41 | hypothetical protein | phrog_1545 | unknown function | unknown function | -1 | 29220 | 29360 |
| AOQ27858.1 | KX574455_p21 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15026 | 15622 |
| AOQ27909.1 | KX574455_p72 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44898 | 45317 |
| AOQ27886.1 | KX574455_p49 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35602 | 35799 |
| AOQ27884.1 | KX574455_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32931 | 33509 |
| AOQ27880.1 | KX574455_p43 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 31202 | 31537 |
| AOQ27923.1 | KX574455_p86 | hypothetical protein | phrog_15034 | unknown function | unknown function | -1 | 49599 | 49730 |
| AOQ27908.1 | KX574455_p71 | RecB-like nuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44092 | 44901 |
| AOQ27903.1 | KX574455_p67 | phosphoesterase | phrog_547 | phosphoesterase | other | -1 | 42795 | 43394 |
| AOQ27862.1 | KX574455_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19083 | 20093 |
| AOQ27873.1 | KX574455_p36 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 28024 | 28176 |
| AOQ27841.1 | KX574455_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2345 | 2641 |
| AOQ27861.1 | KX574455_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16549 | 19062 |
| AOQ27894.1 | KX574455_p58 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39155 | 39652 |
| AOQ27851.1 | KX574455_p14 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12128 | 13084 |
| AOQ27904.1 | KX574455_p68 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 43391 | 43531 |
| AOQ27843.1 | KX574455_p6 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3231 | 4199 |
| AOQ27929.1 | KX574455_p92 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51219 | 51296 |
| AOQ27921.1 | KX574455_p84 | hypothetical protein | phrog_3256 | unknown function | unknown function | -1 | 48833 | 49195 |
| AOQ27883.1 | KX574455_p46 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32156 | 32863 |
| AOQ27890.1 | KX574455_p53 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36825 | 37592 |
| AOQ27913.1 | KX574455_p76 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 46628 | 46861 |
| AOQ27867.1 | KX574455_p30 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 24453 | 25124 |
| AOQ27920.1 | KX574455_p83 | hypothetical protein | phrog_2223 | unknown function | unknown function | -1 | 48533 | 48799 |
| AOQ27881.1 | KX574455_p44 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31537 | 31947 |
| AOQ27896.1 | KX574455_p60 | hydrolase | phrog_789 | esterase/lipase | other | -1 | 39743 | 40579 |
| AOQ27855.1 | KX574455_p18 | head-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13878 | 14246 |
| AOQ27870.1 | KX574455_p33 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 26906 | 27343 |
| AOQ27838.1 | KX574455_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 392 | 1204 |
| AOQ27895.1 | KX574455_p59 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 39603 | 39746 |
| AOQ27850.1 | KX574455_p13 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11530 | 12087 |
| AOQ27857.1 | KX574455_p20 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 14591 | 15010 |
| AOQ27868.1 | KX574455_p31 | hypothetical protein | phrog_2269 | unknown function | unknown function | 1 | 25133 | 25336 |
| AOQ27893.1 | KX574455_p56 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38309 | 38941 |
| AOQ27860.1 | KX574455_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15736 | 16559 |
| AOQ27914.1 | KX574455_p77 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46858 | 46998 |
| AOQ27849.1 | KX574455_p12 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10687 | 11514 |
| AOQ27872.1 | KX574455_p35 | cytidine deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 27638 | 28024 |
| AOQ27887.1 | KX574455_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35796 | 35981 |
| AOQ27879.1 | KX574455_p42 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29371 | 31194 |
| AOQ27907.1 | KX574455_p70 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43802 | 44044 |
| AOQ27916.1 | KX574455_p79 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47270 | 48043 |
| AOQ27839.1 | KX574455_p2 | hypothetical protein | phrog_8314 | unknown function | unknown function | 1 | 1318 | 2097 |
| AOQ27925.1 | KX574455_p88 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 49819 | 50013 |
| AOQ27876.1 | KX574455_p39 | hypothetical protein | phrog_10511 | unknown function | unknown function | -1 | 28814 | 29014 |
| AOQ27856.1 | KX574455_p19 | head-to-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14246 | 14581 |
| AOQ27842.1 | KX574455_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2677 | 3144 |
| AOQ27853.1 | KX574455_p16 | head-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13313 | 13687 |
| AOQ27901.1 | KX574455_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41922 | 42668 |
| AOQ27891.1 | KX574455_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37585 | 38040 |
| AOQ27919.1 | KX574455_p82 | hypothetical protein | phrog_21270 | unknown function | unknown function | -1 | 48408 | 48536 |
| AOQ27918.1 | KX574455_p81 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 48194 | 48397 |
| AOQ27845.1 | KX574455_p8 | holin | phrog_526 | holin | lysis | 1 | 6216 | 6641 |
| AOQ27846.1 | KX574455_p9 | lysin B | phrog_102 | endolysin | lysis | 1 | 6638 | 7402 |
| AOQ27924.1 | KX574455_p87 | hypothetical protein | phrog_2001 | unknown function | unknown function | -1 | 49727 | 49840 |
| AOQ27910.2 | KX574455_p73 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45372 | 45917 |
| AOQ27928.1 | KX574455_p91 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50469 | 51191 |
| AOQ27892.1 | KX574455_p55 | glutaredoxin-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 38037 | 38309 |
| AOQ27898.1 | KX574455_p62 | hypothetical protein | phrog_3369 | unknown function | unknown function | -1 | 40953 | 41108 |
| AOQ27885.1 | KX574455_p48 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33521 | 35602 |
| AOQ27859.1 | KX574455_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15736 | 16140 |
| AOQ27844.1 | KX574455_p7 | lysin A | phrog_317 | endolysin | lysis | 1 | 4738 | 6219 |
| AOQ27840.1 | KX574455_p3 | hypothetical protein | phrog_8551 | unknown function | unknown function | 1 | 2097 | 2348 |
| AOQ27875.1 | KX574455_p38 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28546 | 28830 |
| AOQ27926.1 | KX574455_p89 | hypothetical protein | phrog_3207 | unknown function | unknown function | -1 | 50028 | 50294 |
| AOQ27911.1 | KX574455_p74 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 46204 | 46362 |
| AOQ27871.1 | KX574455_p34 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 27467 | 27637 |
| AOQ27930.1 | KX574455_p93 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51327 | 51638 |
| AOQ27912.1 | KX574455_p75 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46359 | 46631 |
| AOQ27897.1 | KX574455_p61 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 40576 | 40953 |
| AOQ27888.1 | KX574455_p51 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35965 | 36672 |
| AOQ27852.1 | KX574455_p15 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 13154 | 13309 |
| AOQ27847.1 | KX574455_p10 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7416 | 9203 |
| AOQ27874.1 | KX574455_p37 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28173 | 28559 |
| AOQ27889.1 | KX574455_p52 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 36669 | 36821 |
| AOQ27905.1 | KX574455_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43528 | 43761 |
| AOQ27866.1 | KX574455_p29 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 22600 | 24453 |
| AOQ27915.1 | KX574455_p78 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46992 | 47270 |
| AOQ27899.1 | KX574455_p63 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41105 | 41341 |
| AOS48098.1 | KX574455_p57 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38769 | 39158 |
| AOQ27902.1 | KX574455_p66 | hypothetical protein | phrog_17366 | unknown function | unknown function | -1 | 42652 | 42798 |
| AOQ27917.1 | KX574455_p80 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48046 | 48174 |
| AOQ27854.1 | KX574455_p17 | head-tail connector | phrog_830 | head-tail connector protein | connector | 1 | 13684 | 13878 |
| AOQ27900.1 | KX574455_p64 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 41504 | 41890 |
| AOQ27922.1 | KX574455_p85 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49222 | 49602 |
| AOQ27864.1 | KX574455_p27 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 21897 | 22340 |
| AOQ27882.1 | KX574455_p45 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 31947 | 32153 |