| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX641264 |
Definition |
Mycobacterium phage LindNT, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
60053 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
93 |
%GC |
66.78 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AOT25063.1 | KX641264_p45 | HTH DNA binding protein | phrog_2654 | unknown function | unknown function | 1 | 36395 | 36562 |
| AOT25066.1 | KX641264_p48 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 37556 | 37819 |
| AOT25108.1 | KX641264_p90 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 58597 | 58866 |
| AOT25029.1 | KX641264_p11 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7280 | 7822 |
| AOT25096.1 | KX641264_p78 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 52889 | 53365 |
| AOT25039.1 | KX641264_p21 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15985 | 17121 |
| AOT25107.1 | KX641264_p89 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 58232 | 58447 |
| AOT25041.1 | KX641264_p23 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 18888 | 19364 |
| AOT25076.1 | KX641264_p58 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 41322 | 41486 |
| AOT25070.1 | KX641264_p52 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39321 | 39701 |
| AOT25043.1 | KX641264_p25 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 20537 | 20845 |
| AOT25069.1 | KX641264_p51 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 38974 | 39324 |
| AOT25054.1 | KX641264_p36 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30152 | 30430 |
| AOT25097.1 | KX641264_p79 | hypothetical protein | phrog_20353 | unknown function | unknown function | 1 | 53349 | 53522 |
| AOT25072.1 | KX641264_p54 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 39977 | 40177 |
| AOT25021.1 | KX641264_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 452 | 706 |
| AOT25064.1 | KX641264_p46 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 36556 | 36771 |
| AOT25034.1 | KX641264_p16 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 9943 | 10368 |
| AOT25051.1 | KX641264_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28085 | 28336 |
| AOT25091.1 | KX641264_p73 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50578 | 50853 |
| AOT25027.1 | KX641264_p9 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4553 | 7063 |
| AOT25061.1 | KX641264_p43 | HTH DNA binding domain protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 35343 | 35582 |
| AOT25019.1 | KX641264_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 79 | 273 |
| AOT25025.1 | KX641264_p7 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1562 | 2983 |
| AOT25024.1 | KX641264_p6 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1351 | 1578 |
| AOT25102.1 | KX641264_p84 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55622 | 56173 |
| AOT25037.1 | KX641264_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11196 | 12046 |
| AOT25035.1 | KX641264_p17 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10468 | 11082 |
| AOT25074.1 | KX641264_p56 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 40742 | 41008 |
| AOT25110.1 | KX641264_p92 | hypothetical protein | phrog_5633 | unknown function | unknown function | 1 | 59563 | 59697 |
| AOT25111.1 | KX641264_p93 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59694 | 59996 |
| AOT25058.1 | KX641264_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 32665 | 33753 |
| AOT25022.1 | KX641264_p4 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 703 | 930 |
| AOT25068.1 | KX641264_p50 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 38772 | 38942 |
| AOT25084.1 | KX641264_p66 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44352 | 44723 |
| AOT25095.1 | KX641264_p77 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 51999 | 52892 |
| AOT25094.1 | KX641264_p76 | hypothetical protein | phrog_5776 | unknown function | unknown function | 1 | 51871 | 52002 |
| AOT25067.1 | KX641264_p49 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 37816 | 38760 |
| AOT25082.1 | KX641264_p64 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43499 | 44008 |
| AOT25031.1 | KX641264_p13 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8945 | 9331 |
| AOT25101.1 | KX641264_p83 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 55242 | 55622 |
| AOT25046.1 | KX641264_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24385 | 24756 |
| AOT25093.1 | KX641264_p75 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 51505 | 51783 |
| AOT25036.1 | KX641264_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11196 | 11636 |
| AOT25050.1 | KX641264_p32 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 27747 | 28088 |
| AOT25065.1 | KX641264_p47 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 36768 | 37559 |
| AOT25109.1 | KX641264_p91 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 59288 | 59518 |
| AOT25026.1 | KX641264_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2980 | 4548 |
| AOT25056.1 | KX641264_p38 | hypothetical protein | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 31008 | 31940 |
| AOT25042.1 | KX641264_p24 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19448 | 20530 |
| AOT25057.1 | KX641264_p39 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 32005 | 32283 |
| AOT25080.1 | KX641264_p62 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 43082 | 43297 |
| AOT25023.1 | KX641264_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1155 | 1358 |
| AOT25020.1 | KX641264_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 270 | 455 |
| AOT25103.1 | KX641264_p85 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56166 | 56735 |
| AOT25106.1 | KX641264_p88 | hypothetical protein | phrog_5243 | unknown function | unknown function | 1 | 57914 | 58111 |
| AOT25049.1 | KX641264_p31 | holin | phrog_565 | holin | lysis | 1 | 27310 | 27750 |
| AOT25040.1 | KX641264_p22 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17122 | 18888 |
| AOT25085.1 | KX641264_p67 | DNA primase/polymerase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44765 | 47383 |
| AOT25033.1 | KX641264_p15 | head-to-tail connector | phrog_387 | neck protein | connector | 1 | 9665 | 9946 |
| AOT25098.1 | KX641264_p80 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53516 | 53713 |
| AOT25088.1 | KX641264_p70 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48778 | 49239 |
| AOT25104.1 | KX641264_p86 | HTH DNA binding domain protein | phrog_3665 | unknown function | unknown function | 1 | 56732 | 56893 |
| AOT25075.1 | KX641264_p57 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41005 | 41325 |
| AOT25059.1 | KX641264_p41 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33857 | 34750 |
| AOT25078.1 | KX641264_p60 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42358 | 42552 |
| AOT25062.1 | KX641264_p44 | HTH DNA binding protein | phrog_2908 | unknown function | unknown function | 1 | 35871 | 36221 |
| AOT25032.1 | KX641264_p14 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 9328 | 9684 |
| AOT25030.1 | KX641264_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7898 | 8833 |
| AOT25099.1 | KX641264_p81 | hypothetical protein | phrog_6426 | unknown function | unknown function | 1 | 53710 | 53943 |
| AOT25090.1 | KX641264_p72 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 50348 | 50581 |
| AOT25081.1 | KX641264_p63 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43297 | 43416 |
| AOT25071.1 | KX641264_p53 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39702 | 39980 |
| AOT25105.1 | KX641264_p87 | hypothetical protein | phrog_5812 | unknown function | unknown function | 1 | 57064 | 57882 |
| AOT25044.1 | KX641264_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 20846 | 23278 |
| AOT25100.1 | KX641264_p82 | RNA ligase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54058 | 55245 |
| AOT25077.1 | KX641264_p59 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41483 | 42361 |
| AOT25087.1 | KX641264_p69 | hypothetical protein | phrog_20209 | unknown function | unknown function | 1 | 48480 | 48785 |
| AOT25092.1 | KX641264_p74 | SprT | phrog_1006 | unknown function | unknown function | 1 | 50926 | 51387 |
| AOT25028.1 | KX641264_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7060 | 7245 |
| AOT25073.1 | KX641264_p55 | DnaQ-like protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40200 | 40742 |
| AOT25089.1 | KX641264_p71 | peptidase | phrog_908 | unknown function | unknown function | 1 | 49236 | 50336 |
| AOT25086.1 | KX641264_p68 | RusA | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47792 | 48487 |
| AOT25060.1 | KX641264_p42 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34787 | 35164 |
| AOT25055.1 | KX641264_p37 | hypothetical protein | phrog_7081 | unknown function | unknown function | 1 | 30506 | 30904 |
| AOT25045.1 | KX641264_p27 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 23290 | 24303 |
| AOT25047.1 | KX641264_p29 | lysin A | phrog_1519 | endolysin | lysis | 1 | 24775 | 26430 |
| AOT25079.1 | KX641264_p61 | hypothetical protein | phrog_9435 | unknown function | unknown function | 1 | 42606 | 43085 |
| AOT25083.1 | KX641264_p65 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 44110 | 44352 |
| AOT25048.1 | KX641264_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 26427 | 27299 |
| AOT25052.1 | KX641264_p34 | exonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28323 | 29531 |
| AOT25038.1 | KX641264_p20 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 12047 | 15883 |
| AOT25053.1 | KX641264_p35 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29724 | 30155 |