Genomic map of Streptomyces phage Rima (KX670790)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX670790
Definition
Streptomyces phage Rima, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Rimavirus; Strepomyces virus Rima.
DB of origin
NUCCORE
Length
56168
Host Name
Streptomyces azureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
59.55
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AOZ64977.1 KX670790_p23 tapemeasure protein phrog_4372 tail length tape measure protein tail 1 16166 21652
AOZ64956.1 KX670790_p2 HNH endonuclease phrog_4321 HNH endonuclease DNA, RNA and nucleotide metabolism 1 563 892
AOZ65009.1 KX670790_p57 hypothetical protein phrog_800 terminase small subunit head and packaging 1 35818 36270
AOZ65003.1 KX670790_p51 hypothetical protein phrog_18045 unknown function unknown function 1 33883 34050
AOZ65029.1 KX670790_p77 hypothetical protein phrog_16429 unknown function unknown function 1 47472 47771
AOZ64975.1 KX670790_p21 chitosanase phrog_20173 unknown function unknown function 1 13969 15765
AOZ65027.1 KX670790_p75 hypothetical protein phrog_14977 unknown function unknown function 1 46443 46922
AOZ65036.1 KX670790_p84 hydrolase phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 52079 52369
AOZ64999.1 KX670790_p47 hypothetical protein phrog_301 secreted protein other 1 31127 31693
AOZ64974.1 KX670790_p20 hypothetical protein phrog_21232 unknown function unknown function 1 13690 13956
AOZ65039.1 KX670790_p87 hypothetical protein phrog_4303 unknown function unknown function 1 55726 55989
AOZ65034.1 KX670790_p82 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 49849 51033
AOZ65018.1 KX670790_p66 hypothetical protein phrog_918 unknown function unknown function 1 43429 43863
AOZ64984.1 KX670790_p30 hypothetical protein phrog_1454 unknown function unknown function 1 25633 25872
AOZ64968.1 KX670790_p14 capsid maturation protease phrog_3270 head maturation protease head and packaging 1 8730 10763
AOZ64964.1 KX670790_p10 hypothetical protein phrog_17496 unknown function unknown function 1 5956 6309
AOZ64985.1 KX670790_p31 hypothetical protein phrog_5818 unknown function unknown function 1 25938 26228
AOZ65021.1 KX670790_p69 hypothetical protein phrog_19574 unknown function unknown function 1 44472 44711
AOZ65008.1 KX670790_p56 hypothetical protein phrog_21951 unknown function unknown function 1 35636 35821
AOZ65010.1 KX670790_p58 hypothetical protein phrog_2152 unknown function unknown function 1 36267 37199
AOZ64987.1 KX670790_p33 hypothetical protein phrog_21174 unknown function unknown function 1 26714 26974
AOZ65040.1 KX670790_p40 hypothetical protein phrog_20298 unknown function unknown function 1 29162 29353
AOZ65012.1 KX670790_p60 hypothetical protein phrog_4678 unknown function unknown function 1 37986 38525
AOZ64982.1 KX670790_p28 hypothetical protein phrog_4105 unknown function unknown function 1 24913 25311
AOZ64978.1 KX670790_p24 minor tail protein phrog_33 distal tail protein Dit tail 1 21627 22451
AOZ65014.1 KX670790_p62 hypothetical protein phrog_33560 unknown function unknown function 1 42562 42726
AOZ65037.1 KX670790_p85 ATP-dependent helicase phrog_3953 exonuclease DNA, RNA and nucleotide metabolism 1 52341 52946
AOZ65006.1 KX670790_p54 hypothetical protein phrog_6038 unknown function unknown function 1 35038 35181
AOZ65007.1 KX670790_p55 hypothetical protein phrog_19999 unknown function unknown function 1 35181 35639
AOZ65025.1 KX670790_p73 hypothetical protein phrog_19190 unknown function unknown function 1 46002 46226
AOZ65017.1 KX670790_p65 hypothetical protein phrog_25824 unknown function unknown function 1 43219 43398
AOZ64972.1 KX670790_p18 hypothetical protein phrog_4338 unknown function unknown function 1 12332 12874
AOZ65001.1 KX670790_p49 hypothetical protein phrog_17286 unknown function unknown function 1 32662 33084
AOZ64983.1 KX670790_p29 hypothetical protein phrog_9233 holin lysis 1 25265 25624
AOZ64980.1 KX670790_p26 hypothetical protein phrog_9081 unknown function unknown function 1 23639 23884
AOZ64971.1 KX670790_p17 major tail protein phrog_2645 major tail protein tail 1 11417 12301
AOZ64998.1 KX670790_p46 hypothetical protein phrog_21743 unknown function unknown function 1 30754 31134
AOZ65024.1 KX670790_p72 hypothetical protein phrog_19794 unknown function unknown function 1 45767 46000
AOZ64993.1 KX670790_p39 hypothetical protein phrog_21206 unknown function unknown function 1 28737 29027
AOZ64981.1 KX670790_p27 hypothetical protein phrog_6977 minor tail protein tail 1 23893 24885
AOZ65004.1 KX670790_p52 hypothetical protein phrog_21468 unknown function unknown function 1 34085 34267
AOZ64990.1 KX670790_p36 hypothetical protein phrog_19607 unknown function unknown function 1 27756 27986
AOZ65011.1 KX670790_p59 hypothetical protein phrog_4695 unknown function unknown function 1 37214 37969
AOZ65015.1 KX670790_p63 hypothetical protein phrog_26463 unknown function unknown function 1 42723 42887
AOZ64992.1 KX670790_p38 hypothetical protein singleton unknown function unknown function 1 28401 28637
AOZ64962.1 KX670790_p8 terminase large subunit phrog_9 terminase large subunit head and packaging 1 3146 4891
AOZ64986.1 KX670790_p32 hypothetical protein phrog_20510 unknown function unknown function 1 26401 26625
AOZ65032.1 KX670790_p80 hypothetical protein phrog_27678 unknown function unknown function 1 48477 48764
AOZ65035.1 KX670790_p83 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 51477 51986
AOZ65002.1 KX670790_p50 hypothetical protein phrog_4282 unknown function unknown function 1 33177 33704
AOZ64995.1 KX670790_p43 hypothetical protein phrog_18148 unknown function unknown function 1 29789 30016
AOZ65013.1 KX670790_p61 DNA polymerase/primase phrog_4210 DNA polymerase DNA, RNA and nucleotide metabolism 1 38537 42550
AOZ65028.1 KX670790_p76 hypothetical protein phrog_14977 unknown function unknown function 1 46997 47428
AOZ64994.1 KX670790_p42 hypothetical protein phrog_18827 unknown function unknown function 1 29605 29799
AOZ65019.1 KX670790_p67 hypothetical protein phrog_24837 unknown function unknown function 1 43880 44080
AOZ64969.1 KX670790_p15 hypothetical protein phrog_4270 unknown function unknown function 1 10800 11111
AOZ65038.1 KX670790_p86 HTH DNA binding domain protein phrog_4291 RNA-dependent RNA polymerase DNA, RNA and nucleotide metabolism 1 52943 55729
AOZ64955.1 KX670790_p1 HNH endonuclease phrog_4259 unknown function unknown function 1 148 492
AOZ64958.1 KX670790_p4 hypothetical protein phrog_15884 unknown function unknown function 1 1191 1322
AOZ65000.1 KX670790_p48 hypothetical protein phrog_2152 unknown function unknown function 1 31745 32524
AOZ64957.1 KX670790_p3 hypothetical protein phrog_25585 unknown function unknown function 1 909 1175
AOZ64989.1 KX670790_p35 hypothetical protein phrog_26203 unknown function unknown function 1 27397 27684
AOZ64961.1 KX670790_p7 hypothetical protein phrog_11022 unknown function unknown function 1 2624 3130
AOZ64963.1 KX670790_p9 hypothetical protein phrog_7502 unknown function unknown function 1 4904 5932
AOZ65030.1 KX670790_p78 hypothetical protein phrog_26685 unknown function unknown function 1 47771 48187
AOZ64960.1 KX670790_p6 hypothetical protein phrog_4247 virion structural protein head and packaging 1 2226 2603
AOZ64967.1 KX670790_p13 hypothetical protein phrog_12541 unknown function unknown function 1 8219 8713
AOZ65041.1 KX670790_p41 hypothetical protein phrog_18432 unknown function unknown function 1 29381 29608
AOZ64966.1 KX670790_p12 portal protein phrog_12 portal protein head and packaging 1 6870 8222
AOZ64979.1 KX670790_p25 minor tail protein phrog_538 minor tail protein tail 1 22448 23623
AOZ64965.1 KX670790_p11 hypothetical protein phrog_6291 unknown function unknown function 1 6306 6833
AOZ64991.1 KX670790_p37 hypothetical protein phrog_6618 unknown function unknown function 1 28045 28293
AOZ65026.1 KX670790_p74 hypothetical protein phrog_16489 unknown function unknown function 1 46238 46432
AOZ65031.1 KX670790_p79 hypothetical protein phrog_21766 unknown function unknown function 1 48187 48465
AOZ64959.1 KX670790_p5 endoysin phrog_16241 endolysin lysis 1 1319 2188
AOZ65033.1 KX670790_p81 hypothetical protein phrog_17813 unknown function unknown function 1 48883 49842
AOZ65022.1 KX670790_p70 hypothetical protein phrog_16939 unknown function unknown function 1 44686 45666
AOZ65016.1 KX670790_p64 hypothetical protein phrog_19392 unknown function unknown function 1 42884 43219
AOZ64976.1 KX670790_p22 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 15792 16169
AOZ64996.1 KX670790_p44 hypothetical protein phrog_12653 unknown function unknown function 1 30082 30279
AOZ64997.1 KX670790_p45 hypothetical protein phrog_21350 unknown function unknown function 1 30403 30681
AOZ65005.1 KX670790_p53 hypothetical protein phrog_4079 unknown function unknown function 1 34317 35024
AOZ65023.1 KX670790_p71 hypothetical protein phrog_31028 unknown function unknown function 1 45627 45770
AOZ64973.1 KX670790_p19 major tail protein phrog_2645 major tail protein tail 1 12889 13677
AOZ64988.1 KX670790_p34 hypothetical protein phrog_21911 unknown function unknown function 1 27046 27273
AOZ64970.1 KX670790_p16 hypothetical protein phrog_78 tail terminator connector 1 11134 11400
AOZ65020.1 KX670790_p68 hypothetical protein phrog_17648 unknown function unknown function 1 44100 44318