| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX670790 |
Definition |
Streptomyces phage Rima, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Rimavirus; Strepomyces virus Rima. |
DB of origin |
NUCCORE |
Length |
56168 |
Host Name |
Streptomyces azureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
59.55 |
Number of singletons |
1 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AOZ64977.1 | KX670790_p23 | tapemeasure protein | phrog_4372 | tail length tape measure protein | tail | 1 | 16166 | 21652 |
| AOZ64956.1 | KX670790_p2 | HNH endonuclease | phrog_4321 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 563 | 892 |
| AOZ65009.1 | KX670790_p57 | hypothetical protein | phrog_800 | terminase small subunit | head and packaging | 1 | 35818 | 36270 |
| AOZ65003.1 | KX670790_p51 | hypothetical protein | phrog_18045 | unknown function | unknown function | 1 | 33883 | 34050 |
| AOZ65029.1 | KX670790_p77 | hypothetical protein | phrog_16429 | unknown function | unknown function | 1 | 47472 | 47771 |
| AOZ64975.1 | KX670790_p21 | chitosanase | phrog_20173 | unknown function | unknown function | 1 | 13969 | 15765 |
| AOZ65027.1 | KX670790_p75 | hypothetical protein | phrog_14977 | unknown function | unknown function | 1 | 46443 | 46922 |
| AOZ65036.1 | KX670790_p84 | hydrolase | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52079 | 52369 |
| AOZ64999.1 | KX670790_p47 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 31127 | 31693 |
| AOZ64974.1 | KX670790_p20 | hypothetical protein | phrog_21232 | unknown function | unknown function | 1 | 13690 | 13956 |
| AOZ65039.1 | KX670790_p87 | hypothetical protein | phrog_4303 | unknown function | unknown function | 1 | 55726 | 55989 |
| AOZ65034.1 | KX670790_p82 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 49849 | 51033 |
| AOZ65018.1 | KX670790_p66 | hypothetical protein | phrog_918 | unknown function | unknown function | 1 | 43429 | 43863 |
| AOZ64984.1 | KX670790_p30 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 25633 | 25872 |
| AOZ64968.1 | KX670790_p14 | capsid maturation protease | phrog_3270 | head maturation protease | head and packaging | 1 | 8730 | 10763 |
| AOZ64964.1 | KX670790_p10 | hypothetical protein | phrog_17496 | unknown function | unknown function | 1 | 5956 | 6309 |
| AOZ64985.1 | KX670790_p31 | hypothetical protein | phrog_5818 | unknown function | unknown function | 1 | 25938 | 26228 |
| AOZ65021.1 | KX670790_p69 | hypothetical protein | phrog_19574 | unknown function | unknown function | 1 | 44472 | 44711 |
| AOZ65008.1 | KX670790_p56 | hypothetical protein | phrog_21951 | unknown function | unknown function | 1 | 35636 | 35821 |
| AOZ65010.1 | KX670790_p58 | hypothetical protein | phrog_2152 | unknown function | unknown function | 1 | 36267 | 37199 |
| AOZ64987.1 | KX670790_p33 | hypothetical protein | phrog_21174 | unknown function | unknown function | 1 | 26714 | 26974 |
| AOZ65040.1 | KX670790_p40 | hypothetical protein | phrog_20298 | unknown function | unknown function | 1 | 29162 | 29353 |
| AOZ65012.1 | KX670790_p60 | hypothetical protein | phrog_4678 | unknown function | unknown function | 1 | 37986 | 38525 |
| AOZ64982.1 | KX670790_p28 | hypothetical protein | phrog_4105 | unknown function | unknown function | 1 | 24913 | 25311 |
| AOZ64978.1 | KX670790_p24 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 21627 | 22451 |
| AOZ65014.1 | KX670790_p62 | hypothetical protein | phrog_33560 | unknown function | unknown function | 1 | 42562 | 42726 |
| AOZ65037.1 | KX670790_p85 | ATP-dependent helicase | phrog_3953 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 52341 | 52946 |
| AOZ65006.1 | KX670790_p54 | hypothetical protein | phrog_6038 | unknown function | unknown function | 1 | 35038 | 35181 |
| AOZ65007.1 | KX670790_p55 | hypothetical protein | phrog_19999 | unknown function | unknown function | 1 | 35181 | 35639 |
| AOZ65025.1 | KX670790_p73 | hypothetical protein | phrog_19190 | unknown function | unknown function | 1 | 46002 | 46226 |
| AOZ65017.1 | KX670790_p65 | hypothetical protein | phrog_25824 | unknown function | unknown function | 1 | 43219 | 43398 |
| AOZ64972.1 | KX670790_p18 | hypothetical protein | phrog_4338 | unknown function | unknown function | 1 | 12332 | 12874 |
| AOZ65001.1 | KX670790_p49 | hypothetical protein | phrog_17286 | unknown function | unknown function | 1 | 32662 | 33084 |
| AOZ64983.1 | KX670790_p29 | hypothetical protein | phrog_9233 | holin | lysis | 1 | 25265 | 25624 |
| AOZ64980.1 | KX670790_p26 | hypothetical protein | phrog_9081 | unknown function | unknown function | 1 | 23639 | 23884 |
| AOZ64971.1 | KX670790_p17 | major tail protein | phrog_2645 | major tail protein | tail | 1 | 11417 | 12301 |
| AOZ64998.1 | KX670790_p46 | hypothetical protein | phrog_21743 | unknown function | unknown function | 1 | 30754 | 31134 |
| AOZ65024.1 | KX670790_p72 | hypothetical protein | phrog_19794 | unknown function | unknown function | 1 | 45767 | 46000 |
| AOZ64993.1 | KX670790_p39 | hypothetical protein | phrog_21206 | unknown function | unknown function | 1 | 28737 | 29027 |
| AOZ64981.1 | KX670790_p27 | hypothetical protein | phrog_6977 | minor tail protein | tail | 1 | 23893 | 24885 |
| AOZ65004.1 | KX670790_p52 | hypothetical protein | phrog_21468 | unknown function | unknown function | 1 | 34085 | 34267 |
| AOZ64990.1 | KX670790_p36 | hypothetical protein | phrog_19607 | unknown function | unknown function | 1 | 27756 | 27986 |
| AOZ65011.1 | KX670790_p59 | hypothetical protein | phrog_4695 | unknown function | unknown function | 1 | 37214 | 37969 |
| AOZ65015.1 | KX670790_p63 | hypothetical protein | phrog_26463 | unknown function | unknown function | 1 | 42723 | 42887 |
| AOZ64992.1 | KX670790_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28401 | 28637 |
| AOZ64962.1 | KX670790_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 3146 | 4891 |
| AOZ64986.1 | KX670790_p32 | hypothetical protein | phrog_20510 | unknown function | unknown function | 1 | 26401 | 26625 |
| AOZ65032.1 | KX670790_p80 | hypothetical protein | phrog_27678 | unknown function | unknown function | 1 | 48477 | 48764 |
| AOZ65035.1 | KX670790_p83 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 51477 | 51986 |
| AOZ65002.1 | KX670790_p50 | hypothetical protein | phrog_4282 | unknown function | unknown function | 1 | 33177 | 33704 |
| AOZ64995.1 | KX670790_p43 | hypothetical protein | phrog_18148 | unknown function | unknown function | 1 | 29789 | 30016 |
| AOZ65013.1 | KX670790_p61 | DNA polymerase/primase | phrog_4210 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 38537 | 42550 |
| AOZ65028.1 | KX670790_p76 | hypothetical protein | phrog_14977 | unknown function | unknown function | 1 | 46997 | 47428 |
| AOZ64994.1 | KX670790_p42 | hypothetical protein | phrog_18827 | unknown function | unknown function | 1 | 29605 | 29799 |
| AOZ65019.1 | KX670790_p67 | hypothetical protein | phrog_24837 | unknown function | unknown function | 1 | 43880 | 44080 |
| AOZ64969.1 | KX670790_p15 | hypothetical protein | phrog_4270 | unknown function | unknown function | 1 | 10800 | 11111 |
| AOZ65038.1 | KX670790_p86 | HTH DNA binding domain protein | phrog_4291 | RNA-dependent RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 52943 | 55729 |
| AOZ64955.1 | KX670790_p1 | HNH endonuclease | phrog_4259 | unknown function | unknown function | 1 | 148 | 492 |
| AOZ64958.1 | KX670790_p4 | hypothetical protein | phrog_15884 | unknown function | unknown function | 1 | 1191 | 1322 |
| AOZ65000.1 | KX670790_p48 | hypothetical protein | phrog_2152 | unknown function | unknown function | 1 | 31745 | 32524 |
| AOZ64957.1 | KX670790_p3 | hypothetical protein | phrog_25585 | unknown function | unknown function | 1 | 909 | 1175 |
| AOZ64989.1 | KX670790_p35 | hypothetical protein | phrog_26203 | unknown function | unknown function | 1 | 27397 | 27684 |
| AOZ64961.1 | KX670790_p7 | hypothetical protein | phrog_11022 | unknown function | unknown function | 1 | 2624 | 3130 |
| AOZ64963.1 | KX670790_p9 | hypothetical protein | phrog_7502 | unknown function | unknown function | 1 | 4904 | 5932 |
| AOZ65030.1 | KX670790_p78 | hypothetical protein | phrog_26685 | unknown function | unknown function | 1 | 47771 | 48187 |
| AOZ64960.1 | KX670790_p6 | hypothetical protein | phrog_4247 | virion structural protein | head and packaging | 1 | 2226 | 2603 |
| AOZ64967.1 | KX670790_p13 | hypothetical protein | phrog_12541 | unknown function | unknown function | 1 | 8219 | 8713 |
| AOZ65041.1 | KX670790_p41 | hypothetical protein | phrog_18432 | unknown function | unknown function | 1 | 29381 | 29608 |
| AOZ64966.1 | KX670790_p12 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 6870 | 8222 |
| AOZ64979.1 | KX670790_p25 | minor tail protein | phrog_538 | minor tail protein | tail | 1 | 22448 | 23623 |
| AOZ64965.1 | KX670790_p11 | hypothetical protein | phrog_6291 | unknown function | unknown function | 1 | 6306 | 6833 |
| AOZ64991.1 | KX670790_p37 | hypothetical protein | phrog_6618 | unknown function | unknown function | 1 | 28045 | 28293 |
| AOZ65026.1 | KX670790_p74 | hypothetical protein | phrog_16489 | unknown function | unknown function | 1 | 46238 | 46432 |
| AOZ65031.1 | KX670790_p79 | hypothetical protein | phrog_21766 | unknown function | unknown function | 1 | 48187 | 48465 |
| AOZ64959.1 | KX670790_p5 | endoysin | phrog_16241 | endolysin | lysis | 1 | 1319 | 2188 |
| AOZ65033.1 | KX670790_p81 | hypothetical protein | phrog_17813 | unknown function | unknown function | 1 | 48883 | 49842 |
| AOZ65022.1 | KX670790_p70 | hypothetical protein | phrog_16939 | unknown function | unknown function | 1 | 44686 | 45666 |
| AOZ65016.1 | KX670790_p64 | hypothetical protein | phrog_19392 | unknown function | unknown function | 1 | 42884 | 43219 |
| AOZ64976.1 | KX670790_p22 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 15792 | 16169 |
| AOZ64996.1 | KX670790_p44 | hypothetical protein | phrog_12653 | unknown function | unknown function | 1 | 30082 | 30279 |
| AOZ64997.1 | KX670790_p45 | hypothetical protein | phrog_21350 | unknown function | unknown function | 1 | 30403 | 30681 |
| AOZ65005.1 | KX670790_p53 | hypothetical protein | phrog_4079 | unknown function | unknown function | 1 | 34317 | 35024 |
| AOZ65023.1 | KX670790_p71 | hypothetical protein | phrog_31028 | unknown function | unknown function | 1 | 45627 | 45770 |
| AOZ64973.1 | KX670790_p19 | major tail protein | phrog_2645 | major tail protein | tail | 1 | 12889 | 13677 |
| AOZ64988.1 | KX670790_p34 | hypothetical protein | phrog_21911 | unknown function | unknown function | 1 | 27046 | 27273 |
| AOZ64970.1 | KX670790_p16 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 11134 | 11400 |
| AOZ65020.1 | KX670790_p68 | hypothetical protein | phrog_17648 | unknown function | unknown function | 1 | 44100 | 44318 |