| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX683428 |
Definition |
Mycobacterium phage TBond007, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
61145 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
67.32 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AOT23746.1 | KX683428_p6 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 997 | 1254 |
| AOT23782.1 | KX683428_p42 | integrase | phrog_1 | integrase | integration and excision | 1 | 32080 | 33360 |
| AOT23762.1 | KX683428_p22 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17357 | 19120 |
| AOT23778.1 | KX683428_p38 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30491 | 30931 |
| AOT23781.1 | KX683428_p41 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 31414 | 31716 |
| AOT23763.1 | KX683428_p23 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 19120 | 19632 |
| AOT23816.1 | KX683428_p77 | hypothetical protein | phrog_7536 | unknown function | unknown function | 1 | 52120 | 52299 |
| AOT23755.1 | KX683428_p15 | head-to-tail connector | phrog_387 | neck protein | connector | 1 | 9455 | 9739 |
| AOT23823.1 | KX683428_p84 | hypothetical protein | phrog_15782 | unknown function | unknown function | 1 | 55479 | 55790 |
| AOT23825.1 | KX683428_p86 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 56266 | 56523 |
| AOT23804.1 | KX683428_p65 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43864 | 44235 |
| AOT23829.1 | KX683428_p90 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 57419 | 58108 |
| AOT23817.1 | KX683428_p78 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 52296 | 53180 |
| AOT23765.1 | KX683428_p25 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 20784 | 21101 |
| AOT23775.1 | KX683428_p35 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28761 | 29891 |
| AOT23772.1 | KX683428_p32 | holin | phrog_565 | holin | lysis | 1 | 27736 | 28182 |
| AOT23818.1 | KX683428_p79 | hypothetical protein | phrog_7731 | unknown function | unknown function | 1 | 53177 | 53656 |
| AOT23766.1 | KX683428_p26 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 21085 | 23436 |
| AOT23773.1 | KX683428_p33 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 28179 | 28526 |
| AOT23769.1 | KX683428_p29 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24880 | 25236 |
| AOT23826.1 | KX683428_p87 | hypothetical protein | phrog_12202 | unknown function | unknown function | 1 | 56523 | 56645 |
| AOT23807.1 | KX683428_p68 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 47964 | 48410 |
| AOT23796.1 | KX683428_p56 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 40342 | 40611 |
| AOT23832.1 | KX683428_p93 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 58969 | 59667 |
| AOT23758.1 | KX683428_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11100 | 11534 |
| AOT23771.1 | KX683428_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 26937 | 27725 |
| AOT23786.1 | KX683428_p46 | helix-turn-helix DNA binding domain protein | phrog_20078 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35490 | 35609 |
| AOT23808.1 | KX683428_p69 | hypothetical protein | phrog_15207 | unknown function | unknown function | 1 | 48407 | 48571 |
| AOT23819.1 | KX683428_p80 | hypothetical protein | phrog_14052 | unknown function | unknown function | 1 | 53650 | 54132 |
| AOT23799.1 | KX683428_p60 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 42031 | 42432 |
| AOT23748.1 | KX683428_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2673 | 4238 |
| AOT23839.1 | KX683428_p96 | hypothetical protein | phrog_15061 | unknown function | unknown function | 1 | 60344 | 60790 |
| AOT23801.1 | KX683428_p62 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 42811 | 42927 |
| AOT23827.1 | KX683428_p88 | hypothetical protein | phrog_20318 | unknown function | unknown function | 1 | 56767 | 56949 |
| AOT23809.1 | KX683428_p70 | helix-turn-helix DNA binding domain protein | phrog_908 | unknown function | unknown function | 1 | 48564 | 49481 |
| AOT23836.1 | KX683428_p2 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 191 | 415 |
| AOT23777.1 | KX683428_p37 | hypothetical protein | phrog_16894 | unknown function | unknown function | 1 | 30166 | 30342 |
| AOT23761.1 | KX683428_p21 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16221 | 17357 |
| AOT23812.1 | KX683428_p73 | hypothetical protein | phrog_7658 | unknown function | unknown function | 1 | 50302 | 50538 |
| AOT23787.1 | KX683428_p47 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35606 | 35818 |
| AOT23788.1 | KX683428_p48 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 35822 | 36199 |
| AOT23803.1 | KX683428_p64 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43622 | 43864 |
| AOT23789.1 | KX683428_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36196 | 36684 |
| AOT23798.1 | KX683428_p59 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 41791 | 41967 |
| AOT23747.1 | KX683428_p7 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1226 | 2662 |
| AOT23800.1 | KX683428_p61 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 42632 | 42811 |
| AOT23744.1 | KX683428_p4 | hypothetical protein | phrog_14141 | unknown function | unknown function | 1 | 576 | 716 |
| AOT23794.1 | KX683428_p54 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39480 | 39776 |
| AOT23833.1 | KX683428_p95 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 60105 | 60332 |
| AOT23828.1 | KX683428_p89 | hypothetical protein | phrog_23190 | unknown function | unknown function | 1 | 57028 | 57291 |
| AOT23749.1 | KX683428_p9 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4264 | 6768 |
| AOT23757.1 | KX683428_p17 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10318 | 10929 |
| AOT23750.1 | KX683428_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6765 | 6965 |
| AOT23756.1 | KX683428_p16 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 9736 | 10170 |
| AOT23821.1 | KX683428_p82 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 54432 | 54899 |
| AOT23754.1 | KX683428_p14 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 9121 | 9474 |
| AOT23779.1 | KX683428_p39 | hypothetical protein | phrog_11692 | unknown function | unknown function | 1 | 30928 | 31119 |
| AOT23797.1 | KX683428_p58 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40913 | 41794 |
| AOT23838.1 | KX683428_p57 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 40608 | 40916 |
| AOT23814.1 | KX683428_p75 | protease | phrog_1006 | unknown function | unknown function | 1 | 50937 | 51500 |
| AOT23752.1 | KX683428_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7696 | 8619 |
| AOT23805.1 | KX683428_p66 | DNA primase/helicase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44278 | 46887 |
| AOT23790.1 | KX683428_p50 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 36776 | 37453 |
| AOT23768.1 | KX683428_p28 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23723 | 24787 |
| AOT23780.1 | KX683428_p40 | hypothetical protein | phrog_9364 | unknown function | unknown function | 1 | 31180 | 31365 |
| AOT23831.1 | KX683428_p92 | hypothetical protein | phrog_6135 | unknown function | unknown function | 1 | 58518 | 58784 |
| AOT23837.1 | KX683428_p3 | hypothetical protein | phrog_37609 | unknown function | unknown function | 1 | 412 | 579 |
| AOT23776.1 | KX683428_p36 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 29888 | 30127 |
| AOT23753.1 | KX683428_p13 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8738 | 9121 |
| AOT23783.1 | KX683428_p43 | hypothetical protein | phrog_8155 | unknown function | unknown function | 1 | 33360 | 33704 |
| AOT23784.1 | KX683428_p44 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33785 | 34675 |
| AOT23760.1 | KX683428_p20 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 11948 | 16126 |
| AOT23767.1 | KX683428_p27 | minor tail protein | phrog_3901 | unknown function | unknown function | 1 | 23436 | 23723 |
| AOT23811.1 | KX683428_p72 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 49916 | 50185 |
| AOT23802.1 | KX683428_p63 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43007 | 43525 |
| AOT23820.1 | KX683428_p81 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 54141 | 54329 |
| AOT23770.1 | KX683428_p30 | lysin A | phrog_317 | endolysin | lysis | 1 | 25255 | 26940 |
| AOT23751.1 | KX683428_p11 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7077 | 7625 |
| AOT23759.1 | KX683428_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11100 | 11944 |
| AOT23806.1 | KX683428_p67 | resolvase | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47285 | 47971 |
| AOT23830.1 | KX683428_p91 | hypothetical protein | phrog_16846 | unknown function | unknown function | 1 | 58222 | 58470 |
| AOT23822.1 | KX683428_p83 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 54889 | 55482 |
| AOT23813.1 | KX683428_p74 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 50594 | 50806 |
| AOT23774.1 | KX683428_p34 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28523 | 28774 |
| AOT23764.1 | KX683428_p24 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19681 | 20769 |
| AOT23795.1 | KX683428_p55 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39788 | 40345 |
| AOT23815.1 | KX683428_p76 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 51627 | 52022 |
| AOT23810.1 | KX683428_p71 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 49524 | 49919 |
| AOT23785.1 | KX683428_p45 | helix-turn-helix DNA binding domain protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34734 | 35156 |
| AOT23745.1 | KX683428_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 833 | 1027 |
| AOT23743.1 | KX683428_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 51 | 194 |
| AOT23793.1 | KX683428_p53 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39064 | 39483 |
| AOT23791.1 | KX683428_p51 | WhiB transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 37450 | 37719 |
| AOT23792.1 | KX683428_p52 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 37716 | 39071 |
| AOT23824.1 | KX683428_p85 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 55787 | 56050 |
| AOT23834.1 | KX683428_p97 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60792 | 61079 |
| AOT23835.1 | KX683428_p94 | hypothetical protein | phrog_35138 | unknown function | unknown function | 1 | 59829 | 60077 |