| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX712238 |
Definition |
Mycobacterium phage Zephyr, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52320 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
63.93 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APQ42080.1 | KX712238_p68 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42225 | 42545 |
| APQ42102.1 | KX712238_p90 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 51170 | 51529 |
| APQ42040.1 | KX712238_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21033 | 21215 |
| APQ42101.1 | KX712238_p89 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 50982 | 51170 |
| APQ42092.1 | KX712238_p80 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47710 | 47913 |
| APQ42044.1 | KX712238_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 23842 | 24189 |
| APQ42075.1 | KX712238_p63 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40529 | 40825 |
| APQ42031.1 | KX712238_p17 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13005 | 13454 |
| APQ42026.1 | KX712238_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8548 | 9990 |
| APQ42091.1 | KX712238_p79 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47444 | 47713 |
| APQ42018.1 | KX712238_p4 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1827 | 2117 |
| APQ42086.1 | KX712238_p74 | hypothetical protein | phrog_2730 | unknown function | unknown function | -1 | 45450 | 45623 |
| APQ42096.1 | KX712238_p84 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48411 | 48560 |
| APQ42069.1 | KX712238_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38348 | 38926 |
| APQ42084.1 | KX712238_p72 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 43909 | 44616 |
| APQ42028.1 | KX712238_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10926 | 11438 |
| APQ42056.1 | KX712238_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32072 | 32359 |
| APQ42067.1 | KX712238_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37516 | 38133 |
| APQ42024.1 | KX712238_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5875 | 6843 |
| APQ42020.1 | KX712238_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3214 | 3915 |
| APQ42025.1 | KX712238_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 6863 | 8551 |
| APQ42106.1 | KX712238_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38715 | 39230 |
| APQ42089.1 | KX712238_p77 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46374 | 46886 |
| APQ42041.1 | KX712238_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21215 | 23017 |
| APQ42072.1 | KX712238_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39441 | 39575 |
| APQ42053.1 | KX712238_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31544 | 31816 |
| APQ42055.1 | KX712238_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31980 | 32075 |
| APQ42103.1 | KX712238_p91 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51526 | 51624 |
| APQ42058.1 | KX712238_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32733 | 34559 |
| APQ42100.1 | KX712238_p88 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 50546 | 50701 |
| APQ42027.1 | KX712238_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9987 | 10868 |
| APQ42032.1 | KX712238_p18 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 13454 | 13816 |
| APQ42015.1 | KX712238_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 598 | 894 |
| APQ42105.1 | KX712238_p60 | hypothetical protein | phrog_10835 | unknown function | unknown function | -1 | 39688 | 39858 |
| APQ42019.1 | KX712238_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2134 | 3204 |
| APQ42054.1 | KX712238_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31813 | 31983 |
| APQ42099.1 | KX712238_p87 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 49961 | 50245 |
| APQ42049.1 | KX712238_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28152 | 29057 |
| APQ42066.1 | KX712238_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37346 | 37519 |
| APQ42065.1 | KX712238_p51 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 36582 | 37349 |
| APQ42077.1 | KX712238_p65 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41646 | 41819 |
| APQ42098.1 | KX712238_p86 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 49178 | 49855 |
| APQ42093.1 | KX712238_p81 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47910 | 48098 |
| APQ42085.1 | KX712238_p73 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 44951 | 45412 |
| APQ42057.1 | KX712238_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32356 | 32736 |
| APQ42079.1 | KX712238_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41935 | 42228 |
| APQ42087.1 | KX712238_p75 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45620 | 45940 |
| APQ42037.1 | KX712238_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15543 | 16441 |
| APQ42064.1 | KX712238_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36437 | 36577 |
| APQ42070.1 | KX712238_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39209 | 39373 |
| APQ42023.1 | KX712238_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4464 | 5885 |
| APQ42051.1 | KX712238_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29485 | 29766 |
| APQ42016.1 | KX712238_p2 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 929 | 1369 |
| APQ42090.1 | KX712238_p78 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47148 | 47447 |
| APQ42035.1 | KX712238_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14670 | 15521 |
| APQ42039.1 | KX712238_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18957 | 21014 |
| APQ42017.1 | KX712238_p3 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1541 | 1852 |
| APQ42048.1 | KX712238_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27961 | 28152 |
| APQ42097.1 | KX712238_p85 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 48557 | 48874 |
| APQ42060.1 | KX712238_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34725 | 34955 |
| APQ42047.1 | KX712238_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27631 | 27951 |
| APQ42078.1 | KX712238_p66 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 41816 | 41938 |
| APQ42095.1 | KX712238_p83 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48262 | 48414 |
| APQ42068.1 | KX712238_p54 | hypothetical protein | phrog_8843 | unknown function | unknown function | -1 | 38130 | 38351 |
| APQ42061.1 | KX712238_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34986 | 35477 |
| APQ42083.1 | KX712238_p71 | hypothetical protein | phrog_8167 | unknown function | unknown function | -1 | 43558 | 43893 |
| APQ42088.1 | KX712238_p76 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45937 | 46332 |
| APQ42021.1 | KX712238_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3929 | 4189 |
| APQ42081.1 | KX712238_p69 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 42549 | 42731 |
| APQ42034.1 | KX712238_p20 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 14215 | 14661 |
| APQ42042.1 | KX712238_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23055 | 23501 |
| APQ42062.1 | KX712238_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35474 | 35656 |
| APQ42030.1 | KX712238_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12544 | 13005 |
| APQ42033.1 | KX712238_p19 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13816 | 14211 |
| APQ42076.1 | KX712238_p64 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40825 | 41646 |
| APQ42038.1 | KX712238_p24 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16453 | 18933 |
| APQ42104.1 | KX712238_p92 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51723 | 51932 |
| APQ42074.1 | KX712238_p62 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40446 | 40532 |
| APQ42094.1 | KX712238_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48098 | 48265 |
| APQ42036.1 | KX712238_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15543 | 16019 |
| APQ42059.1 | KX712238_p45 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 34600 | 34728 |
| APQ42046.1 | KX712238_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26060 | 27538 |
| APQ42071.1 | KX712238_p58 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 39373 | 39444 |
| APQ42063.1 | KX712238_p49 | helix-turn-helix DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35653 | 36444 |
| APQ42082.1 | KX712238_p70 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42758 | 43558 |
| APQ42022.1 | KX712238_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4197 | 4454 |
| APQ42052.1 | KX712238_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 29921 | 31423 |
| APQ42073.1 | KX712238_p61 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39965 | 40459 |
| APQ42029.1 | KX712238_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11449 | 12465 |
| APQ42045.1 | KX712238_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24214 | 26067 |
| APQ42050.1 | KX712238_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29188 | 29484 |
| APQ42043.1 | KX712238_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23513 | 23845 |