Genomic map of Salinivibrio phage SMHB1 (KX774374)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX774374
Definition
Salinivibrio phage SMHB1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Playavirus; Salinivibrio virus SMHB1.
DB of origin
NUCCORE
Length
32826
Host Name
Salinivibrio
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
50.79
Number of singletons
14
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AOY11844.1 KX774374_p39 hypothetical protein phrog_7885 unknown function unknown function 1 22907 23155
AOY11807.1 KX774374_p2 hypothetical protein singleton unknown function unknown function 1 1617 2105
AOY11848.1 KX774374_p43 hypothetical protein phrog_6 baseplate wedge subunit tail 1 26052 27239
AOY11830.1 KX774374_p25 zinc-finger protein phrog_603 transcriptional regulator transcription regulation -1 12234 12671
AOY11828.1 KX774374_p23 hypothetical protein singleton unknown function unknown function 1 11492 11941
AOY11806.1 KX774374_p1 integrase phrog_1 integrase integration and excision 1 450 1514
AOY11854.1 KX774374_p49 hypothetical protein phrog_4011 baseplate protein tail 1 31704 32435
AOY11839.1 KX774374_p34 tail sheath protein phrog_907 tail sheath tail 1 20100 21221
AOY11808.1 KX774374_p3 hypothetical protein phrog_2700 unknown function unknown function -1 2154 2663
AOY11812.1 KX774374_p7 hypothetical protein singleton unknown function unknown function 1 4108 4266
AOY11829.1 KX774374_p24 hypothetical protein singleton unknown function unknown function 1 11938 12252
AOY11809.1 KX774374_p4 hypothetical protein singleton unknown function unknown function -1 2715 3167
AOY11825.1 KX774374_p20 hypothetical protein singleton unknown function unknown function 1 10563 10724
AOY11833.1 KX774374_p28 capsid-scaffolding protein phrog_73 head scaffolding protein head and packaging 1 15745 16704
AOY11849.1 KX774374_p44 hypothetical protein phrog_1228 tail protein tail 1 27226 27840
AOY11820.1 KX774374_p15 replication protein phrog_91 nicking at origin of replication DNA, RNA and nucleotide metabolism 1 6614 9046
AOY11814.1 KX774374_p9 hypothetical protein phrog_1300 excisionase integration and excision 1 4829 5092
AOY11823.1 KX774374_p18 hypothetical protein phrog_8 transcriptional regulator transcription regulation -1 9998 10333
AOY11834.1 KX774374_p29 capsid protein phrog_70 major head protein head and packaging 1 16704 17756
AOY11845.1 KX774374_p40 hypothetical protein phrog_1214 unknown function unknown function 1 23152 23418
AOY11827.1 KX774374_p22 hypothetical protein singleton unknown function unknown function 1 11340 11474
AOY11843.1 KX774374_p38 hypothetical protein phrog_1544 unknown function unknown function 1 22322 22906
AOY11811.1 KX774374_p6 Cox protein phrog_575 Cox-like excisionase and repressor integration and excision 1 3905 4105
AOY11850.1 KX774374_p45 tail fibre protein phrog_13388 tail collar fiber protein tail 1 27837 30023
AOY11851.1 KX774374_p46 hypothetical protein phrog_188 tail fiber assembly protein tail 1 30023 30481
AOY11819.1 KX774374_p14 hypothetical protein phrog_5095 unknown function unknown function 1 6381 6617
AOY11817.1 KX774374_p12 hypothetical protein singleton unknown function unknown function 1 5790 5906
AOY11852.1 KX774374_p47 hypothetical protein phrog_1398 unknown function unknown function 1 30485 31030
AOY11837.1 KX774374_p32 hypothetical protein phrog_65 tail terminator connector 1 18981 19457
AOY11816.1 KX774374_p11 hypothetical protein singleton unknown function unknown function 1 5571 5780
AOY11822.1 KX774374_p17 HTH-type transcriptional regulator singleton unknown function unknown function 1 9621 9965
AOY11832.1 KX774374_p27 terminase ATPase subunit phrog_2 terminase large subunit head and packaging -1 13770 15563
AOY11815.1 KX774374_p10 hypothetical protein phrog_5349 unknown function unknown function 1 5102 5506
AOY11853.1 KX774374_p48 hypothetical protein phrog_196 baseplate hub tail 1 31027 31713
AOY11818.1 KX774374_p13 hypothetical protein singleton unknown function unknown function 1 5911 6372
AOY11813.1 KX774374_p8 CII protein phrog_101 CII-like transcriptional activator transcription regulation 1 4294 4815
AOY11831.1 KX774374_p26 portal vortex protein phrog_68 portal protein head and packaging -1 12730 13788
AOY11840.1 KX774374_p35 tail tube protein phrog_1182 tail protein tail 1 21221 21676
AOY11846.1 KX774374_p41 tail length determinator phrog_28 tail length tape measure protein tail 1 23607 25733
AOY11836.1 KX774374_p31 head completion protein phrog_71 head-tail adaptor Ad1 connector 1 18574 18981
AOY11835.1 KX774374_p30 terminase endonuclease subunit phrog_74 terminase small subunit head and packaging 1 17759 18475
AOY11810.1 KX774374_p5 CI protein phrog_4 transcriptional repressor transcription regulation -1 3213 3812
AOY11824.1 KX774374_p19 hypothetical protein singleton unknown function unknown function 1 10314 10439
AOY11841.1 KX774374_p36 hypothetical protein singleton unknown function unknown function 1 21695 21901
AOY11847.1 KX774374_p42 hypothetical protein phrog_1237 unknown function unknown function 1 25730 26059
AOY11838.1 KX774374_p33 tail completion protein phrog_26 tail completion or Neck1 protein connector 1 19441 20097
AOY11826.1 KX774374_p21 hypothetical protein singleton unknown function unknown function 1 10880 11275
AOY11842.1 KX774374_p37 hypothetical protein phrog_894 endolysin lysis 1 21906 22319
AOY11821.1 KX774374_p16 endonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 9056 9610