| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX778611 |
Definition |
Serratia phage SM9-3Y, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Serratia virus SM9-3Y. |
DB of origin |
NUCCORE |
Length |
39631 |
Host Name |
Serratia marcescens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
50.74 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APV17419.1 | KX778611_p39 | single stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32205 | 32903 |
| APV17411.1 | KX778611_p27 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 24440 | 24637 |
| APV17399.1 | KX778611_p9 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 6130 | 6720 |
| APV17416.1 | KX778611_p36 | hypothetical protein | phrog_35442 | unknown function | unknown function | 1 | 31283 | 31858 |
| APV17398.1 | KX778611_p5 | host specificity protein B | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 1784 | 2104 |
| APV17410.1 | KX778611_p26 | hypothetical protein | phrog_17444 | unknown function | unknown function | 1 | 24321 | 24443 |
| APV17408.1 | KX778611_p24 | s-adenosyl-l-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 23486 | 23935 |
| AOZ61235.1 | KX778611_p21 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 19730 | 21493 |
| ATS94397.1 | KX778611_p20 | o-spanin | phrog_4306 | Rz-like spanin | lysis | 1 | 19418 | 19672 |
| APV17417.1 | KX778611_p37 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 31855 | 32001 |
| APV17420.1 | KX778611_p40 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 32904 | 33365 |
| APV17413.1 | KX778611_p31 | hypothetical protein | phrog_6440 | unknown function | unknown function | 1 | 28744 | 29238 |
| AOZ61238.1 | KX778611_p32 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 29329 | 29469 |
| APV17402.1 | KX778611_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18252 | 18728 |
| APV17403.1 | KX778611_p17 | holin | phrog_920 | holin | lysis | 1 | 18740 | 18943 |
| AOZ61239.1 | KX778611_p34 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 29827 | 30858 |
| AOZ61234.2 | KX778611_p15 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 16519 | 18240 |
| AOZ61233.1 | KX778611_p14 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 12485 | 16447 |
| AOZ61232.1 | KX778611_p13 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 10223 | 12466 |
| APV17404.1 | KX778611_p18 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 18947 | 19213 |
| APV17412.1 | KX778611_p28 | hypothetical protein | phrog_10380 | unknown function | unknown function | 1 | 24624 | 24794 |
| AOZ61227.1 | KX778611_p6 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 2115 | 3722 |
| APV17425.1 | KX778611_p47 | HNS binding protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 38800 | 39105 |
| AOZ61237.1 | KX778611_p30 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 25989 | 28643 |
| AOZ61241.1 | KX778611_p45 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 36366 | 38480 |
| AOZ61236.1 | KX778611_p29 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 24809 | 25918 |
| APV17418.1 | KX778611_p38 | bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 31988 | 32152 |
| APV17395.1 | KX778611_p2 | hypothetical protein | phrog_5008 | unknown function | unknown function | 1 | 1049 | 1162 |
| APV17401.1 | KX778611_p12 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 9627 | 10220 |
| APV17407.1 | KX778611_p23 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 22158 | 22307 |
| APV17422.1 | KX778611_p43 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 35789 | 36001 |
| AOZ61231.2 | KX778611_p1 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 393 | 1070 |
| APV17421.1 | KX778611_p41 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 33358 | 33813 |
| AOZ61240.2 | KX778611_p42 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 34179 | 35693 |
| APV17424.1 | KX778611_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38625 | 38774 |
| AOZ61230.1 | KX778611_p10 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 6736 | 9141 |
| APV17405.1 | KX778611_p19 | i-spanin | phrog_1327 | Rz-like spanin | lysis | 1 | 19303 | 19755 |
| APV17423.1 | KX778611_p44 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 36014 | 36298 |
| APV17397.1 | KX778611_p4 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 1505 | 1756 |
| APV17409.1 | KX778611_p25 | hypothetical protein | phrog_9817 | unknown function | unknown function | 1 | 24015 | 24299 |
| APV17415.1 | KX778611_p35 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 31026 | 31283 |
| AOZ61228.1 | KX778611_p7 | capsid and scaffold protein | phrog_1052 | head assembly | head and packaging | 1 | 3824 | 4756 |
| APV17400.1 | KX778611_p11 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 9214 | 9624 |
| AOZ61229.1 | KX778611_p8 | minor capsid protein 10A | phrog_267 | major head protein | head and packaging | 1 | 4901 | 5941 |
| APV17406.1 | KX778611_p22 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21503 | 21925 |
| APV17396.1 | KX778611_p3 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 1306 | 1500 |
| APV17414.1 | KX778611_p33 | dGTP triphosphohydrolase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 29469 | 29747 |
| APV17426.1 | KX778611_p48 | HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 39102 | 39311 |