Genomic map of Serratia phage SM9-3Y (KX778611)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX778611
Definition
Serratia phage SM9-3Y, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Serratia virus SM9-3Y.
DB of origin
NUCCORE
Length
39631
Host Name
Serratia marcescens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
50.74
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APV17419.1 KX778611_p39 single stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32205 32903
APV17411.1 KX778611_p27 hypothetical protein phrog_2385 unknown function unknown function 1 24440 24637
APV17399.1 KX778611_p9 tail tubular protein A phrog_446 tail protein tail 1 6130 6720
APV17416.1 KX778611_p36 hypothetical protein phrog_35442 unknown function unknown function 1 31283 31858
APV17398.1 KX778611_p5 host specificity protein B phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 1784 2104
APV17410.1 KX778611_p26 hypothetical protein phrog_17444 unknown function unknown function 1 24321 24443
APV17408.1 KX778611_p24 s-adenosyl-l-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 23486 23935
AOZ61235.1 KX778611_p21 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 19730 21493
ATS94397.1 KX778611_p20 o-spanin phrog_4306 Rz-like spanin lysis 1 19418 19672
APV17417.1 KX778611_p37 hypothetical protein phrog_1312 unknown function unknown function 1 31855 32001
APV17420.1 KX778611_p40 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 32904 33365
APV17413.1 KX778611_p31 hypothetical protein phrog_6440 unknown function unknown function 1 28744 29238
AOZ61238.1 KX778611_p32 hypothetical protein phrog_2490 unknown function unknown function 1 29329 29469
APV17402.1 KX778611_p16 hypothetical protein singleton unknown function unknown function 1 18252 18728
APV17403.1 KX778611_p17 holin phrog_920 holin lysis 1 18740 18943
AOZ61239.1 KX778611_p34 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 29827 30858
AOZ61234.2 KX778611_p15 tail fiber protein phrog_4242 tail fiber protein tail 1 16519 18240
AOZ61233.1 KX778611_p14 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 12485 16447
AOZ61232.1 KX778611_p13 internal virion protein C phrog_1339 internal virion protein head and packaging 1 10223 12466
APV17404.1 KX778611_p18 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 18947 19213
APV17412.1 KX778611_p28 hypothetical protein phrog_10380 unknown function unknown function 1 24624 24794
AOZ61227.1 KX778611_p6 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 2115 3722
APV17425.1 KX778611_p47 HNS binding protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 38800 39105
AOZ61237.1 KX778611_p30 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 25989 28643
AOZ61241.1 KX778611_p45 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 36366 38480
AOZ61236.1 KX778611_p29 protein kinase phrog_2828 serine-threonine kinase other 1 24809 25918
APV17418.1 KX778611_p38 bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 31988 32152
APV17395.1 KX778611_p2 hypothetical protein phrog_5008 unknown function unknown function 1 1049 1162
APV17401.1 KX778611_p12 internal virion protein B phrog_805 internal virion protein head and packaging 1 9627 10220
APV17407.1 KX778611_p23 hypothetical protein phrog_2193 unknown function unknown function 1 22158 22307
APV17422.1 KX778611_p43 hypothetical protein phrog_1950 unknown function unknown function 1 35789 36001
AOZ61231.2 KX778611_p1 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 393 1070
APV17421.1 KX778611_p41 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 33358 33813
AOZ61240.2 KX778611_p42 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 34179 35693
APV17424.1 KX778611_p46 hypothetical protein singleton unknown function unknown function 1 38625 38774
AOZ61230.1 KX778611_p10 tail tubular protein B phrog_457 tail protein tail 1 6736 9141
APV17405.1 KX778611_p19 i-spanin phrog_1327 Rz-like spanin lysis 1 19303 19755
APV17423.1 KX778611_p44 hypothetical protein phrog_2254 unknown function unknown function 1 36014 36298
APV17397.1 KX778611_p4 hypothetical protein phrog_1391 unknown function unknown function 1 1505 1756
APV17409.1 KX778611_p25 hypothetical protein phrog_9817 unknown function unknown function 1 24015 24299
APV17415.1 KX778611_p35 hypothetical protein phrog_1777 unknown function unknown function 1 31026 31283
AOZ61228.1 KX778611_p7 capsid and scaffold protein phrog_1052 head assembly head and packaging 1 3824 4756
APV17400.1 KX778611_p11 internal virion protein A phrog_308 internal virion protein head and packaging 1 9214 9624
AOZ61229.1 KX778611_p8 minor capsid protein 10A phrog_267 major head protein head and packaging 1 4901 5941
APV17406.1 KX778611_p22 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21503 21925
APV17396.1 KX778611_p3 hypothetical protein phrog_1447 unknown function unknown function 1 1306 1500
APV17414.1 KX778611_p33 dGTP triphosphohydrolase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 29469 29747
APV17426.1 KX778611_p48 HNS binding protein phrog_1334 unknown function unknown function 1 39102 39311