| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX815270 |
Definition |
Methylophilaceae phage P19250A, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
38749 |
Host Name |
Methylophilaceae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
35.45 |
Number of singletons |
41 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APC43900.1 | KX815270_p15 | tail length tape-measure protein 1 | singleton | unknown function | unknown function | 1 | 10718 | 12502 |
| APC43892.1 | KX815270_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7128 | 7793 |
| APC43942.1 | KX815270_p57 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 37691 | 38125 |
| APC43931.1 | KX815270_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34040 | 34240 |
| APC43904.1 | KX815270_p19 | host specificity protein J | singleton | unknown function | unknown function | 1 | 14243 | 17542 |
| APC43905.1 | KX815270_p20 | tail fiber protein | singleton | unknown function | unknown function | 1 | 17552 | 18022 |
| APC43935.1 | KX815270_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34896 | 35294 |
| APC43915.1 | KX815270_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28241 | 28468 |
| APC43930.1 | KX815270_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33887 | 34030 |
| APC43914.1 | KX815270_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27742 | 27957 |
| APC43896.1 | KX815270_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9113 | 9340 |
| APC43910.1 | KX815270_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25632 | 26600 |
| APC43901.1 | KX815270_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12506 | 13189 |
| APC43907.1 | KX815270_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20909 | 21388 |
| APC43937.1 | KX815270_p52 | hypothetical protein | phrog_1588 | unknown function | unknown function | 1 | 35802 | 36092 |
| APC43941.1 | KX815270_p56 | hypothetical protein | phrog_3427 | holin | lysis | 1 | 37302 | 37694 |
| APC43919.1 | KX815270_p34 | recombinase | phrog_2324 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 29705 | 30247 |
| APC43888.1 | KX815270_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2275 | 3684 |
| APC43895.1 | KX815270_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8597 | 9094 |
| APC43887.1 | KX815270_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 607 | 2265 |
| APC43933.1 | KX815270_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34428 | 34571 |
| APC43903.1 | KX815270_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13818 | 14243 |
| APC43902.1 | KX815270_p17 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 13189 | 13821 |
| APC43893.1 | KX815270_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7794 | 8138 |
| APC43934.1 | KX815270_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34583 | 34873 |
| APC43913.1 | KX815270_p28 | hypothetical protein | phrog_3322 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 27357 | 27749 |
| APC43898.1 | KX815270_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9904 | 10374 |
| APC43894.1 | KX815270_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8140 | 8562 |
| APC43906.1 | KX815270_p21 | PE family protein | singleton | unknown function | unknown function | 1 | 18045 | 20822 |
| APC43932.1 | KX815270_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34252 | 34431 |
| APC43912.1 | KX815270_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27227 | 27388 |
| APC43924.1 | KX815270_p39 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 31756 | 32046 |
| APC43936.1 | KX815270_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35570 | 35809 |
| APC43925.1 | KX815270_p40 | hypothetical protein | phrog_9327 | primosomal protein | DNA, RNA and nucleotide metabolism | 1 | 32098 | 32763 |
| APC43890.1 | KX815270_p5 | gene transfer agent capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4600 | 5988 |
| APC43899.1 | KX815270_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10407 | 10715 |
| APC43921.1 | KX815270_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30666 | 31016 |
| APC43908.1 | KX815270_p23 | tail length tape-measure protein | singleton | unknown function | unknown function | 1 | 21390 | 24995 |
| APC43927.1 | KX815270_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33146 | 33415 |
| APC43938.1 | KX815270_p53 | hypothetical protein | phrog_858 | starvation-inducible transcriptional regulator | transcription regulation | 1 | 36156 | 36560 |
| APC43889.1 | KX815270_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3787 | 4596 |
| APC43918.1 | KX815270_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29535 | 29708 |
| APC43940.1 | KX815270_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36981 | 37301 |
| APC43909.1 | KX815270_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25010 | 25639 |
| APC43939.1 | KX815270_p54 | holin | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36560 | 36997 |
| APC43922.1 | KX815270_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31145 | 31399 |
| APC43917.1 | KX815270_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29101 | 29538 |
| APC43891.1 | KX815270_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6066 | 7124 |
| APC43929.1 | KX815270_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33630 | 33848 |
| APC43920.1 | KX815270_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30272 | 30676 |
| APC43897.1 | KX815270_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9340 | 9894 |
| APC43911.1 | KX815270_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26597 | 27040 |
| APC43916.1 | KX815270_p31 | diguanylate cyclase/phosphodiesterase | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28452 | 29108 |
| APC43943.1 | KX815270_p58 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 38177 | 38497 |
| APC43923.1 | KX815270_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31404 | 31595 |
| APC43926.1 | KX815270_p41 | ell wall hydrolase | phrog_938 | endolysin | lysis | 1 | 32772 | 33128 |
| APC43886.1 | KX815270_p1 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 38 | 511 |
| APC43928.1 | KX815270_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33405 | 33623 |