| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX817173 |
Definition |
Mycobacterium phage Tuco, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
NUCCORE |
Length |
76944 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
148 |
%GC |
63.01 |
Number of singletons |
1 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APC44068.1 | KX817173_p125 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 69856 | 70056 |
| APC43951.1 | KX817173_p8 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1956 | 2255 |
| APC43968.1 | KX817173_p25 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20261 | 21940 |
| APC43975.1 | KX817173_p32 | membrane domain protein | phrog_411 | unknown function | unknown function | 1 | 29791 | 30075 |
| APC43963.1 | KX817173_p21 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12469 | 12930 |
| APC43998.1 | KX817173_p55 | membrane domain protein | phrog_950 | unknown function | unknown function | -1 | 40110 | 40883 |
| APC44004.1 | KX817173_p61 | DNA binding protein | phrog_2800 | unknown function | unknown function | 1 | 42854 | 43132 |
| APC44058.1 | KX817173_p115 | hypothetical protein | phrog_8804 | unknown function | unknown function | 1 | 67060 | 67269 |
| APC44060.1 | KX817173_p117 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 67352 | 67594 |
| APC43976.1 | KX817173_p33 | lysin A | phrog_317 | endolysin | lysis | 1 | 30149 | 31651 |
| APC43989.1 | KX817173_p46 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 36737 | 36865 |
| APC44041.1 | KX817173_p98 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58974 | 59309 |
| APC44052.1 | KX817173_p109 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 64570 | 64833 |
| APC44074.1 | KX817173_p132 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 71281 | 71670 |
| APC44047.1 | KX817173_p104 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 62589 | 62945 |
| APC44018.1 | KX817173_p75 | membrane domain protein | phrog_1622 | unknown function | unknown function | 1 | 48662 | 48835 |
| APC44050.1 | KX817173_p107 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 63605 | 63895 |
| APC44019.1 | KX817173_p76 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48838 | 49071 |
| APC44036.1 | KX817173_p93 | HTH DNA binding protein | phrog_1590 | unknown function | unknown function | 1 | 56823 | 57644 |
| APC43987.1 | KX817173_p44 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35852 | 36340 |
| APC43970.1 | KX817173_p27 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22799 | 25195 |
| APC43964.1 | KX817173_p20 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 12469 | 13343 |
| APC44069.1 | KX817173_p126 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 70053 | 70190 |
| APC44085.1 | KX817173_p143 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 74998 | 75171 |
| APC44089.1 | KX817173_p147 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 76152 | 76373 |
| APC44028.1 | KX817173_p85 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52669 | 52890 |
| APC43966.1 | KX817173_p23 | tape measure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13849 | 18582 |
| APC43958.1 | KX817173_p15 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 9678 | 10244 |
| APC44034.1 | KX817173_p91 | membrane domain protein | phrog_2844 | unknown function | unknown function | 1 | 55366 | 55464 |
| APC43980.1 | KX817173_p37 | membrane domain protein | phrog_726 | unknown function | unknown function | 1 | 33220 | 33636 |
| APC44091.1 | KX817173_p130 | hypothetical protein | phrog_6448 | unknown function | unknown function | 1 | 70644 | 70757 |
| APC44077.1 | KX817173_p135 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 72111 | 72479 |
| APC44090.1 | KX817173_p148 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 76363 | 76710 |
| APC43946.1 | KX817173_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| APC43949.1 | KX817173_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| APC44009.1 | KX817173_p66 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 44348 | 44509 |
| APC44000.1 | KX817173_p57 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41635 | 41733 |
| APC44013.1 | KX817173_p70 | ERF family ssDNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46424 | 47146 |
| APC44062.1 | KX817173_p119 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 68561 | 68698 |
| APC44016.1 | KX817173_p73 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47920 | 48288 |
| APC44082.1 | KX817173_p140 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 73797 | 74033 |
| APC44073.1 | KX817173_p131 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 71021 | 71284 |
| APC44043.1 | KX817173_p100 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 59845 | 61065 |
| APC44037.1 | KX817173_p94 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57641 | 57901 |
| APC44078.1 | KX817173_p136 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 72476 | 72934 |
| APC44022.1 | KX817173_p79 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49785 | 50021 |
| APC43984.1 | KX817173_p41 | DNA bridging protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 34760 | 35146 |
| APC44020.1 | KX817173_p77 | DNA processing chain A | phrog_289 | GTP-binding domain | other | 1 | 49068 | 49481 |
| APC44017.1 | KX817173_p74 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48285 | 48662 |
| APC44014.1 | KX817173_p71 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 47139 | 47450 |
| APC44056.1 | KX817173_p113 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 66129 | 66914 |
| APC44051.1 | KX817173_p108 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 64349 | 64573 |
| APC43974.1 | KX817173_p31 | HTH DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29482 | 29658 |
| APC44021.1 | KX817173_p78 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49478 | 49795 |
| APC43965.1 | KX817173_p22 | HNH endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 13333 | 13848 |
| APC43997.1 | KX817173_p54 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39893 | 40132 |
| APC44076.1 | KX817173_p134 | hypothetical protein | phrog_8201 | unknown function | unknown function | -1 | 72040 | 72114 |
| APC43982.1 | KX817173_p39 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 34050 | 34637 |
| APC43995.1 | KX817173_p52 | membrane domain protein | phrog_2847 | unknown function | unknown function | -1 | 38320 | 38622 |
| APC43952.1 | KX817173_p9 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2303 | 4966 |
| APC43988.1 | KX817173_p45 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 36333 | 36629 |
| APC43945.1 | KX817173_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| APC43950.1 | KX817173_p7 | membrane domain protein | phrog_2142 | unknown function | unknown function | 1 | 1511 | 1855 |
| APC44023.1 | KX817173_p80 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 50018 | 50668 |
| APC44079.1 | KX817173_p137 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 72949 | 73278 |
| APC44080.1 | KX817173_p138 | hypothetical protein | phrog_21747 | unknown function | unknown function | -1 | 73290 | 73676 |
| APC43996.1 | KX817173_p53 | integrase | phrog_1 | integrase | integration and excision | 1 | 38873 | 39754 |
| APC44088.1 | KX817173_p146 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 75730 | 76077 |
| APC43990.1 | KX817173_p47 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36865 | 37032 |
| APC44032.1 | KX817173_p89 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 53953 | 54894 |
| APC44065.1 | KX817173_p122 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 69044 | 69298 |
| APC44053.1 | KX817173_p110 | hydrolase | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64844 | 65218 |
| APC44084.1 | KX817173_p142 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 74601 | 74993 |
| APC43969.1 | KX817173_p26 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21949 | 22782 |
| APC44031.1 | KX817173_p88 | membrane domain protein | phrog_2894 | unknown function | unknown function | 1 | 53604 | 53798 |
| APC43993.1 | KX817173_p50 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 37492 | 37638 |
| APC44038.1 | KX817173_p95 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57918 | 58076 |
| APC43979.1 | KX817173_p36 | lysin B | phrog_102 | endolysin | lysis | 1 | 32366 | 33223 |
| APC43959.1 | KX817173_p16 | head-to-tail connector protein | phrog_1531 | head closure | connector | 1 | 10257 | 10592 |
| APC44042.1 | KX817173_p99 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59306 | 59848 |
| APC43955.1 | KX817173_p12 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6745 | 7839 |
| APC44039.1 | KX817173_p96 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 58073 | 58525 |
| APC43992.1 | KX817173_p49 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 37258 | 37473 |
| APC44071.1 | KX817173_p128 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 70366 | 70497 |
| APC43961.1 | KX817173_p18 | head-to-tail connector protein | phrog_813 | head-tail adaptor | connector | 1 | 10947 | 11351 |
| APC43981.1 | KX817173_p38 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33643 | 33888 |
| APC44064.1 | KX817173_p121 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68897 | 69034 |
| APC44029.1 | KX817173_p86 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52883 | 53248 |
| APC43953.1 | KX817173_p10 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4978 | 5199 |
| APC44012.1 | KX817173_p69 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46021 | 46431 |
| APC43991.1 | KX817173_p48 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 37029 | 37265 |
| APC43983.1 | KX817173_p40 | hypothetical protein | phrog_33228 | unknown function | unknown function | -1 | 34641 | 34757 |
| APC44083.1 | KX817173_p141 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 74049 | 74597 |
| APC44059.1 | KX817173_p116 | hypothetical protein | phrog_6210 | unknown function | unknown function | 1 | 67266 | 67355 |
| APC43985.1 | KX817173_p42 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 35194 | 35391 |
| APC44008.1 | KX817173_p65 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 44115 | 44348 |
| APC44070.1 | KX817173_p127 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 70187 | 70366 |
| APC43967.1 | KX817173_p24 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18612 | 20273 |
| APC44063.1 | KX817173_p120 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 68685 | 68858 |
| APC43999.1 | KX817173_p56 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40978 | 41409 |
| APC44030.1 | KX817173_p87 | holiday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53245 | 53607 |
| APC44087.1 | KX817173_p145 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 75410 | 75607 |
| APC44027.1 | KX817173_p84 | WhiB family transcription factor | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 52419 | 52694 |
| APC44025.1 | KX817173_p82 | dsDNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50990 | 52252 |
| APC43960.1 | KX817173_p17 | head-to-tail connector protein | phrog_2805 | minor tail protein | tail | 1 | 10589 | 10969 |
| APC43947.1 | KX817173_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| APC43956.1 | KX817173_p13 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7927 | 9420 |
| APC43977.1 | KX817173_p34 | holin | phrog_526 | holin | lysis | 1 | 31655 | 32038 |
| APC44048.1 | KX817173_p105 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62946 | 63236 |
| APC43994.1 | KX817173_p51 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37638 | 38033 |
| APC44044.1 | KX817173_p101 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 61058 | 61498 |
| APC44066.1 | KX817173_p123 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 69247 | 69708 |
| APC43954.1 | KX817173_p11 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 5186 | 6742 |
| APC44024.1 | KX817173_p81 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50665 | 50997 |
| APC44075.1 | KX817173_p133 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 71789 | 72043 |
| APC43948.1 | KX817173_p5 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 783 | 1064 |
| APC43957.1 | KX817173_p14 | head-to-tail connector protein | phrog_2796 | head-tail connector protein | connector | 1 | 9487 | 9678 |
| APC44046.1 | KX817173_p103 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 62395 | 62592 |
| APC44049.1 | KX817173_p106 | HTH DNA binding protein | phrog_1969 | unknown function | unknown function | 1 | 63241 | 63552 |
| APC44072.1 | KX817173_p129 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 70481 | 70642 |
| APC44055.1 | KX817173_p112 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 65525 | 66118 |
| APC44005.1 | KX817173_p62 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 43441 | 43629 |
| APC44081.1 | KX817173_p139 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 73682 | 73807 |
| APC44067.1 | KX817173_p124 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 69705 | 69872 |
| APC43944.1 | KX817173_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 10 | 270 |
| APC43962.1 | KX817173_p19 | major tail protein | phrog_476 | major tail protein | tail | 1 | 11378 | 12349 |
| APC44040.1 | KX817173_p97 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 58529 | 58972 |
| APC43972.1 | KX817173_p29 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 28033 | 28977 |
| APC44026.1 | KX817173_p83 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52249 | 52437 |
| APC43973.1 | KX817173_p30 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 29057 | 29485 |
| APC44003.1 | KX817173_p60 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42711 | 42857 |
| APC44001.1 | KX817173_p58 | membrane domain protein | phrog_2852 | unknown function | unknown function | 1 | 41730 | 41867 |
| APC44010.1 | KX817173_p67 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44556 | 45059 |
| APC44002.1 | KX817173_p59 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 41864 | 42709 |
| APC44033.1 | KX817173_p90 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 55001 | 55369 |
| APC44007.1 | KX817173_p64 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 44000 | 44107 |
| APC43986.1 | KX817173_p43 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 35388 | 35855 |
| APC44035.1 | KX817173_p92 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55461 | 56786 |
| APC44086.1 | KX817173_p144 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 75168 | 75404 |
| APC44057.1 | KX817173_p114 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 66911 | 67063 |
| APC44061.1 | KX817173_p118 | DNA recombinase | phrog_97 | UvsX-like recombinase | other | 1 | 67602 | 68564 |
| APC44054.1 | KX817173_p111 | nucleotide pyrophosphohydrolase | phrog_4826 | unknown function | unknown function | 1 | 65218 | 65535 |
| APC44015.1 | KX817173_p72 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 47450 | 47920 |
| APC43978.1 | KX817173_p35 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 32031 | 32369 |
| APC44006.1 | KX817173_p63 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43676 | 43981 |
| APC44011.1 | KX817173_p68 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45056 | 46024 |
| APC44045.1 | KX817173_p102 | protease | phrog_94 | head maturation protease | head and packaging | 1 | 61587 | 62393 |
| APC43971.1 | KX817173_p28 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25192 | 28032 |