Genomic map of Staphylococcus phage SpT5 (KX827368)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX827368
Definition
Staphylococcus phage SpT5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
39804
Host Name
Staphylococcus pseudintermedius
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
35.79
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APD19760.1 KX827368_p12 hypothetical protein phrog_419 unknown function unknown function 1 12237 12434
APD19764.1 KX827368_p16 CI repressor phrog_8 transcriptional regulator transcription regulation -1 14496 14825
APD19791.1 KX827368_p43 hypothetical protein phrog_467 unknown function unknown function 1 25732 26115
APD19801.1 KX827368_p53 terminase large subunit phrog_2 terminase large subunit head and packaging 1 29056 30330
APD19808.1 KX827368_p60 head-tail connector protein phrog_132 head-tail adaptor connector 1 35564 35896
APD19812.1 KX827368_p64 major tail protein phrog_238 major tail protein tail 1 36973 37626
APD19756.1 KX827368_p8 bifunctional endolysin precursor phrog_759 tail associated cell-wall hydrolase other 1 7703 9592
APD19752.1 KX827368_p4 hypothetical protein phrog_8437 unknown function unknown function 1 4137 4829
APD19768.1 KX827368_p20 hypothetical protein phrog_845 unknown function unknown function 1 15752 15946
APD19775.1 KX827368_p27 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 18732 19361
APD19755.1 KX827368_p7 hypothetical protein phrog_3700 unknown function unknown function 1 7205 7579
APD19753.1 KX827368_p5 GDSL-like lipase/acylhydrolase phrog_5240 tail fiber protein tail 1 4841 5884
APD19798.1 KX827368_p50 hypothetical protein phrog_35325 unknown function unknown function 1 27645 27911
APD19765.1 KX827368_p17 Cro repressor phrog_3 transcriptional repressor transcription regulation 1 14972 15256
APD19750.1 KX827368_p2 tail protein phrog_33 distal tail protein Dit tail 1 1791 2723
APD19804.1 KX827368_p56 hypothetical protein phrog_1865 unknown function unknown function 1 33126 33323
APD19789.1 KX827368_p41 hypothetical protein phrog_4074 unknown function unknown function 1 25236 25487
APD19813.1 KX827368_p65 hypothetical protein phrog_183 tail chaperone protein tail 1 37686 38066
APD19809.1 KX827368_p61 hypothetical protein phrog_348 minor head protein head and packaging 1 35893 36198
APD19773.1 KX827368_p25 hypothetical protein phrog_3119 unknown function unknown function 1 18003 18266
APD19781.1 KX827368_p33 hypothetical protein phrog_3161 unknown function unknown function 1 22999 23220
APD19780.1 KX827368_p32 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 21758 23002
APD19763.1 KX827368_p15 hypothetical protein phrog_19348 unknown function unknown function -1 13314 13967
APD19793.1 KX827368_p45 hypothetical protein phrog_4872 unknown function unknown function 1 26330 26491
APD19776.1 KX827368_p28 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 19358 19948
APD19797.1 KX827368_p49 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 27499 27648
APD19807.1 KX827368_p59 tail protein phrog_341 major tail protein tail 1 35103 35552
APD19799.1 KX827368_p51 sigma 70 factor phrog_36 transcriptional regulator transcription regulation 1 27912 28337
APD19762.1 KX827368_p14 hypothetical protein phrog_7395 unknown function unknown function -1 12832 13269
APD19767.1 KX827368_p19 CRISPR associated protein phrog_1090 unknown function unknown function -1 15432 15695
APD19806.1 KX827368_p58 capsid protein phrog_544 major head protein head and packaging 1 34102 35013
APD19771.1 KX827368_p23 excisionase phrog_989 unknown function unknown function 1 17261 17485
APD19803.1 KX827368_p55 hypothetical protein phrog_115 minor head protein head and packaging 1 31780 33129
APD19787.1 KX827368_p39 hypothetical protein phrog_258 virulence associated other 1 24799 25050
APD19758.1 KX827368_p10 cell wall hydrolase lytN precursor phrog_635 endolysin lysis 1 9877 10632
APD19761.1 KX827368_p13 hypothetical protein phrog_6988 unknown function unknown function -1 12431 12838
APD19794.1 KX827368_p46 hypothetical protein phrog_7797 unknown function unknown function 1 26508 26774
APD19790.1 KX827368_p42 hypothetical protein phrog_14320 unknown function unknown function 1 25484 25735
APD19754.1 KX827368_p6 capsid protein phrog_6183 minor tail protein tail 1 5901 7172
APD19777.1 KX827368_p29 hypothetical protein phrog_398 unknown function unknown function 1 19962 20630
APD19783.1 KX827368_p35 hypothetical protein phrog_433 unknown function unknown function 1 23619 23837
APD19796.1 KX827368_p48 deoxyuridine triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 26917 27435
APD19779.1 KX827368_p31 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 21424 21765
APD19788.1 KX827368_p40 hypothetical protein phrog_3683 unknown function unknown function 1 25054 25239
APD19759.1 KX827368_p11 integrase phrog_1 integrase integration and excision -1 11072 12121
APD19769.1 KX827368_p21 hypothetical protein phrog_16714 unknown function unknown function 1 16025 16219
APD19778.1 KX827368_p30 replication initiation protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 20630 21427
APD19749.1 KX827368_p1 tail tape measure protein phrog_58 tail length tape measure protein tail 1 66 1778
APD19751.1 KX827368_p3 tail endopeptidase phrog_326 tail protein with endopeptidase domain other 1 2736 4133
APD19811.1 KX827368_p63 hypothetical protein phrog_176 tail terminator connector 1 36560 36955
APD19786.1 KX827368_p38 hypothetical protein phrog_1689 nucleotide kinase other 1 24317 24802
APD19800.1 KX827368_p52 terminase small subunit phrog_51 terminase small subunit head and packaging 1 28626 29069
APD19814.1 KX827368_p66 hypothetical protein phrog_441 tail assembly chaperone tail 1 38096 38446
APD19805.1 KX827368_p57 capsid protein phrog_172 head scaffolding protein head and packaging 1 33341 34084
APD19772.1 KX827368_p24 hypothetical protein phrog_401 unknown function unknown function 1 17731 17991
APD19792.1 KX827368_p44 hypothetical protein phrog_12537 unknown function unknown function 1 26117 26329
APD19815.1 KX827368_p67 hypothetical protein phrog_35531 unknown function unknown function -1 39320 39682
APD19784.1 KX827368_p36 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 23848 24156
APD19795.1 KX827368_p47 hypothetical protein phrog_14113 unknown function unknown function 1 26775 26924
APD19802.1 KX827368_p54 portal protein phrog_64 portal protein head and packaging 1 30342 31787
APD19810.1 KX827368_p62 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 36198 36548
APD19770.1 KX827368_p22 antirepressor phrog_463 anti-repressor transcription regulation 1 16521 17264
APD19774.1 KX827368_p26 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 18250 18735
APD19785.1 KX827368_p37 hypothetical protein phrog_13457 unknown function unknown function 1 24153 24317
APD19782.1 KX827368_p34 endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 23204 23626
APD19757.1 KX827368_p9 holin phrog_297 holin lysis 1 9610 9864
APD19766.1 KX827368_p18 hypothetical protein phrog_12362 unknown function unknown function 1 15267 15428