| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX827369 |
Definition |
Staphylococcus phage SpT152, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
41087 |
Host Name |
Staphylococcus pseudintermedius |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
35.53 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD19835.1 | KX827369_p20 | replication initiation protein | phrog_6493 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9404 | 10150 |
| APD19838.1 | KX827369_p23 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 11736 | 11957 |
| APD19883.1 | KX827369_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40525 | 41040 |
| APD19836.1 | KX827369_p21 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10155 | 10502 |
| APD19847.1 | KX827369_p32 | hypothetical protein | phrog_14320 | unknown function | unknown function | 1 | 14145 | 14396 |
| APD19870.1 | KX827369_p55 | major tail protein | phrog_238 | major tail protein | tail | 1 | 26370 | 27023 |
| APD19864.1 | KX827369_p49 | capsid protein | phrog_544 | major head protein | head and packaging | 1 | 23499 | 24410 |
| APD19821.1 | KX827369_p6 | helix-turn-helix protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3782 | 3994 |
| APD19865.1 | KX827369_p50 | tail protein | phrog_341 | major tail protein | tail | 1 | 24500 | 24949 |
| APD19837.1 | KX827369_p22 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 10495 | 11739 |
| APD19822.1 | KX827369_p7 | hypothetical protein | phrog_12362 | unknown function | unknown function | 1 | 4040 | 4201 |
| APD19829.1 | KX827369_p14 | hypothetical protein | phrog_25786 | unknown function | unknown function | 1 | 6751 | 6975 |
| APD19849.1 | KX827369_p34 | hypothetical protein | phrog_12537 | unknown function | unknown function | 1 | 14794 | 15051 |
| APD19873.1 | KX827369_p58 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 27860 | 30979 |
| APD19875.1 | KX827369_p60 | tail endopeptidase | phrog_326 | tail protein with endopeptidase domain | other | 1 | 31937 | 33334 |
| APD19819.1 | KX827369_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2729 | 2896 |
| APD19844.1 | KX827369_p29 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 13535 | 13711 |
| APD19845.1 | KX827369_p30 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 13790 | 14002 |
| APD19858.1 | KX827369_p43 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 18023 | 18466 |
| APD19866.1 | KX827369_p51 | head-tail connector protein | phrog_132 | head-tail adaptor | connector | 1 | 24961 | 25293 |
| APD19871.1 | KX827369_p56 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 27083 | 27463 |
| APD19840.1 | KX827369_p25 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 12356 | 12574 |
| APD19853.1 | KX827369_p38 | deoxyuridine triphosphate nucleotidohydrolase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 15821 | 16309 |
| APD19880.1 | KX827369_p65 | bifunctional endolysin precursor | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 36903 | 38792 |
| APD19872.1 | KX827369_p57 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 27493 | 27843 |
| APD19825.1 | KX827369_p10 | hypothetical protein | phrog_16714 | unknown function | unknown function | 1 | 4798 | 4992 |
| APD19862.1 | KX827369_p47 | hypothetical protein | phrog_1865 | unknown function | unknown function | 1 | 22523 | 22720 |
| APD19879.1 | KX827369_p64 | hypothetical protein | phrog_3700 | unknown function | unknown function | 1 | 36406 | 36780 |
| APD19867.1 | KX827369_p52 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 25290 | 25595 |
| APD19831.1 | KX827369_p16 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7445 | 8113 |
| APD19842.1 | KX827369_p27 | hypothetical protein | phrog_13457 | unknown function | unknown function | 1 | 12890 | 13054 |
| APD19826.1 | KX827369_p11 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 5295 | 6014 |
| APD19857.1 | KX827369_p42 | sigma 70 factor | phrog_36 | transcriptional regulator | transcription regulation | 1 | 17309 | 17734 |
| APD19860.1 | KX827369_p45 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 19739 | 21184 |
| APD19852.1 | KX827369_p37 | hypothetical protein | phrog_26395 | unknown function | unknown function | 1 | 15601 | 15828 |
| APD19877.1 | KX827369_p62 | GDSL-like lipase/acylhydrolase | phrog_5240 | tail fiber protein | tail | 1 | 34042 | 35085 |
| APD19843.1 | KX827369_p28 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 13054 | 13545 |
| APD19823.1 | KX827369_p8 | CRISPR associated protein | phrog_1090 | unknown function | unknown function | -1 | 4205 | 4468 |
| APD19839.1 | KX827369_p24 | endodeoxyribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11941 | 12363 |
| APD19832.1 | KX827369_p17 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8113 | 8550 |
| APD19881.1 | KX827369_p66 | holin | phrog_297 | holin | lysis | 1 | 38810 | 39064 |
| APD19869.1 | KX827369_p54 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 25957 | 26352 |
| APD19868.1 | KX827369_p53 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 25595 | 25945 |
| APD19859.1 | KX827369_p44 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 18453 | 19727 |
| APD19818.1 | KX827369_p3 | hypothetical protein | phrog_8870 | unknown function | unknown function | -1 | 2279 | 2716 |
| APD19830.1 | KX827369_p15 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 6959 | 7444 |
| APD19841.1 | KX827369_p26 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12585 | 12893 |
| APD19833.1 | KX827369_p18 | hypothetical protein | phrog_36718 | unknown function | unknown function | 1 | 8531 | 8725 |
| APD19854.1 | KX827369_p39 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 16807 | 17025 |
| APD19861.1 | KX827369_p46 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 21177 | 22526 |
| APD19878.1 | KX827369_p63 | hypothetical protein | phrog_6183 | minor tail protein | tail | 1 | 35102 | 36373 |
| APD19828.1 | KX827369_p13 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6479 | 6739 |
| APD19876.1 | KX827369_p61 | hypothetical protein | phrog_8437 | unknown function | unknown function | 1 | 33338 | 34030 |
| APD19824.1 | KX827369_p9 | hypothetical protein | phrog_845 | unknown function | unknown function | 1 | 4525 | 4719 |
| APD19817.1 | KX827369_p2 | integrase | phrog_1 | integrase | integration and excision | -1 | 1169 | 2218 |
| APD19856.1 | KX827369_p41 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 17165 | 17308 |
| APD19874.1 | KX827369_p59 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 30992 | 31924 |
| APD19863.1 | KX827369_p48 | capsid protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 22738 | 23481 |
| APD19820.1 | KX827369_p5 | hypothetical protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2908 | 3630 |
| APD19850.1 | KX827369_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15052 | 15312 |
| APD19827.1 | KX827369_p12 | excisionase | phrog_989 | unknown function | unknown function | 1 | 6011 | 6235 |
| APD19848.1 | KX827369_p33 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 14393 | 14794 |
| APD19851.1 | KX827369_p36 | hypothetical protein | phrog_7797 | unknown function | unknown function | 1 | 15334 | 15600 |
| APD19855.1 | KX827369_p40 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 17022 | 17165 |
| APD19882.1 | KX827369_p67 | cell wall hydrolase lytN precursor | phrog_635 | endolysin | lysis | 1 | 39077 | 39832 |
| APD19816.1 | KX827369_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10 | 795 |
| APD19834.1 | KX827369_p19 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8734 | 9411 |
| APD19846.1 | KX827369_p31 | hypothetical protein | phrog_12650 | unknown function | unknown function | 1 | 13972 | 14148 |