Genomic map of Staphylococcus phage SpT152 (KX827369)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX827369
Definition
Staphylococcus phage SpT152, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
41087
Host Name
Staphylococcus pseudintermedius
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
35.53
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APD19835.1 KX827369_p20 replication initiation protein phrog_6493 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 9404 10150
APD19838.1 KX827369_p23 hypothetical protein phrog_3161 unknown function unknown function 1 11736 11957
APD19883.1 KX827369_p68 hypothetical protein singleton unknown function unknown function 1 40525 41040
APD19836.1 KX827369_p21 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 10155 10502
APD19847.1 KX827369_p32 hypothetical protein phrog_14320 unknown function unknown function 1 14145 14396
APD19870.1 KX827369_p55 major tail protein phrog_238 major tail protein tail 1 26370 27023
APD19864.1 KX827369_p49 capsid protein phrog_544 major head protein head and packaging 1 23499 24410
APD19821.1 KX827369_p6 helix-turn-helix protein phrog_3 transcriptional repressor transcription regulation 1 3782 3994
APD19865.1 KX827369_p50 tail protein phrog_341 major tail protein tail 1 24500 24949
APD19837.1 KX827369_p22 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 10495 11739
APD19822.1 KX827369_p7 hypothetical protein phrog_12362 unknown function unknown function 1 4040 4201
APD19829.1 KX827369_p14 hypothetical protein phrog_25786 unknown function unknown function 1 6751 6975
APD19849.1 KX827369_p34 hypothetical protein phrog_12537 unknown function unknown function 1 14794 15051
APD19873.1 KX827369_p58 tail tape measure protein phrog_58 tail length tape measure protein tail 1 27860 30979
APD19875.1 KX827369_p60 tail endopeptidase phrog_326 tail protein with endopeptidase domain other 1 31937 33334
APD19819.1 KX827369_p4 hypothetical protein singleton unknown function unknown function -1 2729 2896
APD19844.1 KX827369_p29 hypothetical protein phrog_258 virulence associated other 1 13535 13711
APD19845.1 KX827369_p30 hypothetical protein phrog_3683 unknown function unknown function 1 13790 14002
APD19858.1 KX827369_p43 terminase small subunit phrog_51 terminase small subunit head and packaging 1 18023 18466
APD19866.1 KX827369_p51 head-tail connector protein phrog_132 head-tail adaptor connector 1 24961 25293
APD19871.1 KX827369_p56 hypothetical protein phrog_183 tail chaperone protein tail 1 27083 27463
APD19840.1 KX827369_p25 hypothetical protein phrog_433 unknown function unknown function 1 12356 12574
APD19853.1 KX827369_p38 deoxyuridine triphosphate nucleotidohydrolase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 15821 16309
APD19880.1 KX827369_p65 bifunctional endolysin precursor phrog_759 tail associated cell-wall hydrolase other 1 36903 38792
APD19872.1 KX827369_p57 hypothetical protein phrog_441 tail assembly chaperone tail 1 27493 27843
APD19825.1 KX827369_p10 hypothetical protein phrog_16714 unknown function unknown function 1 4798 4992
APD19862.1 KX827369_p47 hypothetical protein phrog_1865 unknown function unknown function 1 22523 22720
APD19879.1 KX827369_p64 hypothetical protein phrog_3700 unknown function unknown function 1 36406 36780
APD19867.1 KX827369_p52 hypothetical protein phrog_348 minor head protein head and packaging 1 25290 25595
APD19831.1 KX827369_p16 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7445 8113
APD19842.1 KX827369_p27 hypothetical protein phrog_13457 unknown function unknown function 1 12890 13054
APD19826.1 KX827369_p11 antirepressor phrog_463 anti-repressor transcription regulation 1 5295 6014
APD19857.1 KX827369_p42 sigma 70 factor phrog_36 transcriptional regulator transcription regulation 1 17309 17734
APD19860.1 KX827369_p45 portal protein phrog_64 portal protein head and packaging 1 19739 21184
APD19852.1 KX827369_p37 hypothetical protein phrog_26395 unknown function unknown function 1 15601 15828
APD19877.1 KX827369_p62 GDSL-like lipase/acylhydrolase phrog_5240 tail fiber protein tail 1 34042 35085
APD19843.1 KX827369_p28 hypothetical protein phrog_1689 nucleotide kinase other 1 13054 13545
APD19823.1 KX827369_p8 CRISPR associated protein phrog_1090 unknown function unknown function -1 4205 4468
APD19839.1 KX827369_p24 endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11941 12363
APD19832.1 KX827369_p17 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8113 8550
APD19881.1 KX827369_p66 holin phrog_297 holin lysis 1 38810 39064
APD19869.1 KX827369_p54 hypothetical protein phrog_176 tail terminator connector 1 25957 26352
APD19868.1 KX827369_p53 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 25595 25945
APD19859.1 KX827369_p44 terminase large subunit phrog_2 terminase large subunit head and packaging 1 18453 19727
APD19818.1 KX827369_p3 hypothetical protein phrog_8870 unknown function unknown function -1 2279 2716
APD19830.1 KX827369_p15 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 6959 7444
APD19841.1 KX827369_p26 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12585 12893
APD19833.1 KX827369_p18 hypothetical protein phrog_36718 unknown function unknown function 1 8531 8725
APD19854.1 KX827369_p39 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 16807 17025
APD19861.1 KX827369_p46 hypothetical protein phrog_115 minor head protein head and packaging 1 21177 22526
APD19878.1 KX827369_p63 hypothetical protein phrog_6183 minor tail protein tail 1 35102 36373
APD19828.1 KX827369_p13 hypothetical protein phrog_401 unknown function unknown function 1 6479 6739
APD19876.1 KX827369_p61 hypothetical protein phrog_8437 unknown function unknown function 1 33338 34030
APD19824.1 KX827369_p9 hypothetical protein phrog_845 unknown function unknown function 1 4525 4719
APD19817.1 KX827369_p2 integrase phrog_1 integrase integration and excision -1 1169 2218
APD19856.1 KX827369_p41 hypothetical protein phrog_1367 unknown function unknown function 1 17165 17308
APD19874.1 KX827369_p59 tail protein phrog_33 distal tail protein Dit tail 1 30992 31924
APD19863.1 KX827369_p48 capsid protein phrog_172 head scaffolding protein head and packaging 1 22738 23481
APD19820.1 KX827369_p5 hypothetical protein phrog_4 transcriptional repressor transcription regulation -1 2908 3630
APD19850.1 KX827369_p35 hypothetical protein singleton unknown function unknown function 1 15052 15312
APD19827.1 KX827369_p12 excisionase phrog_989 unknown function unknown function 1 6011 6235
APD19848.1 KX827369_p33 hypothetical protein phrog_467 unknown function unknown function 1 14393 14794
APD19851.1 KX827369_p36 hypothetical protein phrog_7797 unknown function unknown function 1 15334 15600
APD19855.1 KX827369_p40 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 17022 17165
APD19882.1 KX827369_p67 cell wall hydrolase lytN precursor phrog_635 endolysin lysis 1 39077 39832
APD19816.1 KX827369_p1 hypothetical protein singleton unknown function unknown function 1 10 795
APD19834.1 KX827369_p19 hypothetical protein phrog_398 unknown function unknown function 1 8734 9411
APD19846.1 KX827369_p31 hypothetical protein phrog_12650 unknown function unknown function 1 13972 14148