Genomic map of Staphylococcus phage SpT252 (KX827370)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX827370
Definition
Staphylococcus phage SpT252, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
40093
Host Name
Staphylococcus pseudintermedius
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
35.69
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APD19890.1 KX827370_p7 hypothetical protein phrog_3700 unknown function unknown function 1 7205 7579
APD19893.1 KX827370_p10 cell wall hydrolase lytN precursor phrog_635 endolysin lysis 1 9877 10632
APD19889.1 KX827370_p6 capsid protein phrog_6183 minor tail protein tail 1 5901 7172
APD19931.1 KX827370_p48 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 27890 28057
APD19937.1 KX827370_p54 hypothetical protein phrog_115 minor head protein head and packaging 1 32069 33418
APD19891.1 KX827370_p8 bifunctional endolysin precursor phrog_759 tail associated cell-wall hydrolase other 1 7703 9592
APD19914.1 KX827370_p31 replication initiation protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 20607 21335
APD19910.1 KX827370_p27 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 18225 18710
APD19885.1 KX827370_p2 tail protein phrog_33 distal tail protein Dit tail 1 1791 2723
APD19917.1 KX827370_p34 hypothetical protein phrog_3161 unknown function unknown function 1 22921 23145
APD19930.1 KX827370_p47 deoxyuridine triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 27092 27622
APD19907.1 KX827370_p24 hypothetical protein phrog_369 unknown function unknown function 1 17448 17636
APD19908.1 KX827370_p25 hypothetical protein phrog_401 unknown function unknown function 1 17706 17966
APD19941.1 KX827370_p58 tail protein phrog_341 major tail protein tail 1 35392 35841
APD19897.1 KX827370_p14 hypothetical protein phrog_7395 unknown function unknown function -1 12831 13268
APD19902.1 KX827370_p19 CRISPR associated protein phrog_1090 unknown function unknown function -1 15431 15694
APD19909.1 KX827370_p26 hypothetical protein phrog_3119 unknown function unknown function 1 17978 18241
APD19948.1 KX827370_p65 hypothetical protein phrog_441 tail assembly chaperone tail 1 38385 38735
APD19933.1 KX827370_p50 sigma 70 factor phrog_36 transcriptional regulator transcription regulation 1 28201 28626
APD19905.1 KX827370_p22 antirepressor phrog_463 anti-repressor transcription regulation 1 16520 17239
APD19936.1 KX827370_p53 portal protein phrog_64 portal protein head and packaging 1 30631 32076
APD19935.1 KX827370_p52 terminase large subunit phrog_2 terminase large subunit head and packaging 1 29345 30619
APD19906.1 KX827370_p23 excisionase phrog_989 unknown function unknown function 1 17236 17460
APD19901.1 KX827370_p18 hypothetical protein phrog_12362 unknown function unknown function 1 15266 15427
APD19895.1 KX827370_p12 hypothetical protein phrog_419 unknown function unknown function 1 12236 12433
APD19938.1 KX827370_p55 hypothetical protein phrog_1865 unknown function unknown function 1 33415 33612
APD19919.1 KX827370_p36 hypothetical protein phrog_433 unknown function unknown function 1 23550 23768
APD19924.1 KX827370_p41 hypothetical protein phrog_467 unknown function unknown function 1 25399 25797
APD19915.1 KX827370_p32 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 21340 21687
APD19921.1 KX827370_p38 hypothetical protein phrog_1689 nucleotide kinase other 1 24248 24700
APD19886.1 KX827370_p3 tail endopeptidase phrog_326 tail protein with endopeptidase domain other 1 2736 4133
APD19903.1 KX827370_p20 hypothetical protein phrog_845 unknown function unknown function 1 15751 15945
APD19932.1 KX827370_p49 hypothetical protein phrog_1367 unknown function unknown function 1 28057 28200
APD19904.1 KX827370_p21 hypothetical protein phrog_16714 unknown function unknown function 1 16024 16218
APD19911.1 KX827370_p28 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 18707 19336
APD19892.1 KX827370_p9 holin phrog_297 holin lysis 1 9610 9864
APD19887.1 KX827370_p4 hypothetical protein phrog_8437 unknown function unknown function 1 4137 4829
APD19940.1 KX827370_p57 capsid protein phrog_544 major head protein head and packaging 1 34391 35302
APD19927.1 KX827370_p44 hypothetical protein phrog_4872 unknown function unknown function 1 26493 26654
APD19884.1 KX827370_p1 tail tape measure protein phrog_58 tail length tape measure protein tail 1 66 1778
APD19894.1 KX827370_p11 integrase phrog_1 integrase integration and excision -1 11072 12121
APD19918.1 KX827370_p35 endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 23126 23557
APD19922.1 KX827370_p39 hypothetical protein phrog_4074 unknown function unknown function 1 24903 25154
APD19912.1 KX827370_p29 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 19333 19926
APD19949.1 KX827370_p66 hypothetical protein phrog_35531 unknown function unknown function -1 39609 39971
APD19944.1 KX827370_p61 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 36487 36837
APD19925.1 KX827370_p42 hypothetical protein phrog_12537 unknown function unknown function 1 25797 26012
APD19898.1 KX827370_p15 hypothetical protein phrog_19348 unknown function unknown function -1 13313 13966
APD19923.1 KX827370_p40 hypothetical protein phrog_14320 unknown function unknown function 1 25151 25402
APD19945.1 KX827370_p62 hypothetical protein phrog_176 tail terminator connector 1 36849 37244
APD19929.1 KX827370_p46 hypothetical protein phrog_14113 unknown function unknown function 1 26944 27099
APD19934.1 KX827370_p51 terminase small subunit phrog_51 terminase small subunit head and packaging 1 28915 29358
APD19942.1 KX827370_p59 head-tail connector protein phrog_132 head-tail adaptor connector 1 35853 36185
APD19913.1 KX827370_p30 hypothetical protein phrog_398 unknown function unknown function 1 19940 20614
APD19926.1 KX827370_p43 hypothetical protein phrog_9739 unknown function unknown function 1 26013 26492
APD19946.1 KX827370_p63 major tail protein phrog_238 major tail protein tail 1 37262 37915
APD19916.1 KX827370_p33 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 21680 22924
APD19899.1 KX827370_p16 CI repressor phrog_8 transcriptional regulator transcription regulation -1 14495 14824
APD19939.1 KX827370_p56 capsid protein phrog_172 head scaffolding protein head and packaging 1 33630 34373
APD19900.1 KX827370_p17 Cro repressor phrog_3 transcriptional repressor transcription regulation 1 14971 15255
APD19947.1 KX827370_p64 hypothetical protein phrog_183 tail chaperone protein tail 1 37975 38355
APD19920.1 KX827370_p37 hypothetical protein phrog_13457 unknown function unknown function 1 24084 24248
APD19888.1 KX827370_p5 GDSL-like lipase/acylhydrolase phrog_5240 tail fiber protein tail 1 4841 5884
APD19928.1 KX827370_p45 hypothetical protein phrog_7797 unknown function unknown function 1 26676 26942
APD19896.1 KX827370_p13 hypothetical protein phrog_6988 unknown function unknown function -1 12430 12837
APD19943.1 KX827370_p60 hypothetical protein phrog_348 minor head protein head and packaging 1 36182 36487