| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX827371 |
Definition |
Staphylococcus phage SpT99F3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus. |
DB of origin |
NUCCORE |
Length |
40751 |
Host Name |
Staphylococcus pseudintermedius |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
35.58 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD19960.1 | KX827371_p11 | CRISPR associated protein | phrog_1090 | unknown function | unknown function | -1 | 5722 | 5991 |
| APD19983.1 | KX827371_p34 | deoxyuridine triphosphate nucleotidohydrolase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 15023 | 15568 |
| APD20005.1 | KX827371_p56 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 26393 | 26839 |
| APD20014.1 | KX827371_p65 | lysin | phrog_635 | endolysin | lysis | 1 | 37631 | 39091 |
| APD20011.1 | KX827371_p62 | hypothetical protein | phrog_1747 | unknown function | unknown function | 1 | 36672 | 36947 |
| APD19998.1 | KX827371_p49 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 22627 | 23847 |
| APD20017.1 | KX827371_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40089 | 40184 |
| APD19974.1 | KX827371_p25 | hypothetical protein | phrog_13457 | unknown function | unknown function | 1 | 12576 | 12740 |
| APD19997.1 | KX827371_p48 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 21976 | 22548 |
| APD19969.1 | KX827371_p20 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 9262 | 9930 |
| APD19968.1 | KX827371_p19 | hypothetical protein | phrog_36718 | unknown function | unknown function | 1 | 9059 | 9253 |
| APD19986.1 | KX827371_p37 | hypothetical protein | phrog_20229 | unknown function | unknown function | 1 | 16048 | 16329 |
| APD19985.1 | KX827371_p36 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 15844 | 16032 |
| APD19987.1 | KX827371_p38 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 16326 | 16469 |
| APD20002.1 | KX827371_p53 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 24635 | 25012 |
| APD19959.1 | KX827371_p10 | hypothetical protein | phrog_750 | unknown function | unknown function | -1 | 5186 | 5551 |
| APD19975.1 | KX827371_p26 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 12740 | 13201 |
| APD19979.1 | KX827371_p30 | hypothetical protein | phrog_14320 | unknown function | unknown function | 1 | 13812 | 14063 |
| APD19976.1 | KX827371_p27 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 13202 | 13378 |
| APD20000.1 | KX827371_p51 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 24041 | 24322 |
| APD19972.1 | KX827371_p23 | hypothetical protein | phrog_809 | transcriptional regulator | transcription regulation | 1 | 11417 | 11596 |
| APD20009.1 | KX827371_p60 | hypothetical protein | phrog_1786 | minor head protein | head and packaging | 1 | 32998 | 36507 |
| APD19990.1 | KX827371_p41 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 16962 | 17384 |
| APD20010.1 | KX827371_p61 | hypothetical protein | phrog_1399 | unknown function | unknown function | 1 | 36488 | 36625 |
| APD19973.1 | KX827371_p24 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 12021 | 12239 |
| APD19984.1 | KX827371_p35 | hypothetical protein | phrog_2027 | unknown function | unknown function | 1 | 15605 | 15847 |
| APD19965.1 | KX827371_p16 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7487 | 7972 |
| APD19953.1 | KX827371_p4 | hypothetical protein | phrog_11228 | lipoprotein | other | -1 | 2137 | 2637 |
| APD20004.1 | KX827371_p55 | tail protein | phrog_88 | major tail protein | tail | 1 | 25383 | 26327 |
| APD20007.1 | KX827371_p58 | tail tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 27038 | 31480 |
| APD19977.1 | KX827371_p28 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 13457 | 13669 |
| APD19980.1 | KX827371_p31 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 14060 | 14461 |
| APD19982.1 | KX827371_p33 | hypothetical protein | phrog_26395 | unknown function | unknown function | 1 | 14803 | 15030 |
| APD19988.1 | KX827371_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16469 | 16771 |
| APD19961.1 | KX827371_p12 | hypothetical protein | phrog_1263 | unknown function | unknown function | 1 | 6057 | 6197 |
| APD19963.1 | KX827371_p14 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6968 | 7228 |
| APD19954.1 | KX827371_p5 | hypothetical protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2691 | 3317 |
| APD20012.1 | KX827371_p63 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36956 | 37255 |
| APD19951.1 | KX827371_p2 | hypothetical protein | phrog_4525 | unknown function | unknown function | 1 | 1296 | 1892 |
| APD19962.1 | KX827371_p13 | hypothetical protein | phrog_3505 | unknown function | unknown function | -1 | 6190 | 6399 |
| APD20001.1 | KX827371_p52 | head-tail connector protein | phrog_25 | head closure Hc1 | connector | 1 | 24303 | 24635 |
| APD19958.1 | KX827371_p9 | hypothetical protein | phrog_643 | transcriptional regulator | transcription regulation | 1 | 4972 | 5217 |
| APD19999.1 | KX827371_p50 | hypothetical protein | phrog_933 | unknown function | unknown function | 1 | 23864 | 24022 |
| APD19967.1 | KX827371_p18 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8641 | 9078 |
| APD20006.1 | KX827371_p57 | hypothetical protein | phrog_15504 | unknown function | unknown function | 1 | 26881 | 27021 |
| APD20015.1 | KX827371_p66 | hypothetical protein | phrog_7919 | unknown function | unknown function | 1 | 39316 | 39630 |
| APD19981.1 | KX827371_p32 | hypothetical protein | phrog_12537 | unknown function | unknown function | 1 | 14461 | 14802 |
| APD19996.1 | KX827371_p47 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 20730 | 22001 |
| APD19957.1 | KX827371_p8 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 4208 | 4960 |
| APD19966.1 | KX827371_p17 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7973 | 8641 |
| APD19956.1 | KX827371_p7 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | 1 | 3727 | 4170 |
| APD19950.1 | KX827371_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 118 | 1164 |
| APD20013.1 | KX827371_p64 | hypothetical protein | phrog_263 | holin | lysis | 1 | 37381 | 37629 |
| APD19992.1 | KX827371_p43 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17894 | 18250 |
| APD20008.1 | KX827371_p59 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 31480 | 32970 |
| APD20003.1 | KX827371_p54 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 25009 | 25395 |
| APD19994.1 | KX827371_p45 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 18815 | 20515 |
| APD19964.1 | KX827371_p15 | hypothetical protein | phrog_3119 | unknown function | unknown function | 1 | 7240 | 7503 |
| APD19955.1 | KX827371_p6 | helix-turn-helix protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3469 | 3693 |
| APD19995.1 | KX827371_p46 | hypothetical protein | phrog_1142 | unknown function | unknown function | 1 | 20527 | 20724 |
| APD19991.1 | KX827371_p42 | hypothetical protein | phrog_229 | MazG-like pyrophosphatase | other | 1 | 17511 | 17888 |
| APD19971.1 | KX827371_p22 | replicative DNA helicase | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10650 | 11423 |
| APD19952.1 | KX827371_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1893 | 2150 |
| APD20016.1 | KX827371_p67 | hypothetical protein | phrog_7090 | unknown function | unknown function | 1 | 39617 | 39970 |
| APD19989.1 | KX827371_p40 | hypothetical protein | phrog_386 | unknown function | unknown function | 1 | 16774 | 16950 |
| APD19978.1 | KX827371_p29 | hypothetical protein | phrog_12650 | unknown function | unknown function | 1 | 13639 | 13815 |
| APD19993.1 | KX827371_p44 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 18345 | 18815 |
| APD19970.1 | KX827371_p21 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9927 | 10640 |