Genomic map of Shigella phage SH6 (KX828710)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX828710
Definition
Shigella phage SH6, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus SH6.
DB of origin
NUCCORE
Length
50552
Host Name
Shigella sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
82
%GC
45.82
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APC44928.1 KX828710_p51 exodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 30930 31994
APC44933.1 KX828710_p73 hypothetical protein phrog_4344 unknown function unknown function -1 46641 46865
APC44939.1 KX828710_p52 recombination phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32069 32716
APC44941.1 KX828710_p50 lipoprotein phrog_4281 unknown function unknown function -1 30174 30404
APC44920.1 KX828710_p77 hypothetical protein phrog_11577 unknown function unknown function -1 47612 47983
APC44945.1 KX828710_p69 hypothetical protein phrog_2794 unknown function unknown function -1 43874 44281
APC44918.1 KX828710_p24 hypothetical protein phrog_6666 unknown function unknown function 1 8450 8611
APC44951.1 KX828710_p67 spanin phrog_1804 Rz-like spanin lysis 1 43055 43456
APC44969.1 KX828710_p70 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 44286 45854
APC44942.1 KX828710_p29 portal protein phrog_146 portal protein head and packaging 1 11227 12561
APC44914.1 KX828710_p59 DNA methylase phrog_111 DNA methyltransferase other 1 39044 39757
APC44909.1 KX828710_p45 minor tail protein phrog_18 minor tail protein tail 1 23521 24333
APC44913.1 KX828710_p14 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 4138 4425
APC44948.1 KX828710_p22 hypothetical protein phrog_303 unknown function unknown function 1 7852 8082
APC44927.1 KX828710_p74 hypothetical protein phrog_3955 unknown function unknown function -1 46943 47086
APC44986.1 KX828710_p37 hypothetical protein phrog_161 head closure Hc1 connector 1 17580 17960
APC44959.1 KX828710_p55 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 35002 35922
APC44952.1 KX828710_p72 hypothetical protein phrog_9085 unknown function unknown function -1 46428 46637
APC44984.1 KX828710_p11 hypothetical protein phrog_7116 unknown function unknown function 1 3212 3718
APC44972.1 KX828710_p31 major capsid protein phrog_530 head maturation protease head and packaging 1 13315 14427
APC44974.1 KX828710_p44 minor tail protein phrog_14 minor tail protein tail 1 23118 23471
APC44947.1 KX828710_p43 tail tape measure protein phrog_24 tail length tape measure protein tail 1 20242 23115
APC44960.1 KX828710_p18 hypothetical protein phrog_415 polynucleotide kinase other 1 6015 6548
APC44915.1 KX828710_p64 hypothetical protein phrog_4788 unknown function unknown function 1 42057 42233
APC44955.1 KX828710_p32 hypothetical protein phrog_1989 unknown function unknown function 1 14439 14915
APC44949.1 KX828710_p80 hypothetical protein phrog_3623 unknown function unknown function -1 48712 48897
APC44907.1 KX828710_p61 hypothetical protein phrog_2180 unknown function unknown function 1 40057 40281
APC44966.1 KX828710_p8 hypothetical protein singleton unknown function unknown function 1 2122 2379
APC44910.1 KX828710_p19 kinase phrog_139 deoxynucleoside monophosphate kinase other 1 6657 7229
APC44912.1 KX828710_p36 hypothetical protein phrog_302 virion structural protein head and packaging 1 17179 17589
APC44964.1 KX828710_p4 hypothetical protein phrog_12951 unknown function unknown function 1 1092 1559
APC44981.1 KX828710_p9 hypothetical protein phrog_11551 unknown function unknown function 1 2389 2580
APC44937.1 KX828710_p13 hypothetical protein phrog_18601 unknown function unknown function 1 3948 4154
APC44968.1 KX828710_p65 holin phrog_2877 holin lysis 1 42352 42567
APC44978.1 KX828710_p1 hypothetical protein singleton unknown function unknown function 1 6 581
APC44965.1 KX828710_p35 hypothetical protein phrog_2716 unknown function unknown function 1 16847 17134
APC44976.1 KX828710_p57 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 36551 38563
APC44938.1 KX828710_p40 major tail protein phrog_584 major tail protein tail 1 18787 19455
APC44957.1 KX828710_p5 hypothetical protein phrog_11449 unknown function unknown function 1 1638 1868
APC44983.1 KX828710_p33 hypothetical protein phrog_1989 unknown function unknown function 1 14978 15745
APC44935.1 KX828710_p75 hypothetical protein phrog_10555 unknown function unknown function -1 47083 47403
APC44930.1 KX828710_p17 hypothetical protein phrog_10642 unknown function unknown function 1 5485 5931
APC44953.1 KX828710_p28 terminase large subunit phrog_38 terminase large subunit head and packaging 1 9640 11223
APC44929.1 KX828710_p2 hypothetical protein phrog_35072 unknown function unknown function 1 584 823
APC44924.1 KX828710_p42 tape measure chaperone phrog_680 tail length tape measure protein tail 1 20006 20203
APC44946.1 KX828710_p60 hypothetical protein phrog_2676 unknown function unknown function 1 39754 40005
APC44950.1 KX828710_p21 hypothetical protein phrog_9709 unknown function unknown function 1 7508 7852
APC44917.1 KX828710_p54 tail fiber protein phrog_1980 tail fiber protein tail -1 33222 34901
APC44956.1 KX828710_p71 hypothetical protein phrog_2684 unknown function unknown function -1 45931 46347
APC44970.1 KX828710_p12 hypothetical protein phrog_5579 unknown function unknown function 1 3718 3867
APC44940.1 KX828710_p23 hypothetical protein phrog_4927 unknown function unknown function 1 8082 8285
APC44973.1 KX828710_p10 hypothetical protein phrog_9595 unknown function unknown function 1 2652 3140
APC44975.1 KX828710_p49 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover -1 29215 30171
APC44971.1 KX828710_p78 hypothetical protein phrog_13365 unknown function unknown function -1 47988 48218
APC44954.1 KX828710_p81 hypothetical protein phrog_7717 unknown function unknown function -1 48913 49098
APC44925.1 KX828710_p39 hypothetical protein phrog_179 tail terminator connector 1 18386 18784
APC44988.1 KX828710_p15 hypothetical protein phrog_10580 unknown function unknown function 1 4422 5060
APC44922.1 KX828710_p30 minor capsid protein phrog_324 head morphogenesis head and packaging 1 12551 13312
APC44908.1 KX828710_p66 endolysin phrog_7 endolysin lysis 1 42567 43055
APC44943.1 KX828710_p58 hypothetical protein phrog_824 unknown function unknown function 1 38560 38976
APC44979.1 KX828710_p7 hypothetical protein phrog_25570 unknown function unknown function 1 2099 2209
APC44919.1 KX828710_p46 minor tail protein phrog_30 minor tail protein tail 1 24330 25064
APC44944.1 KX828710_p27 terminase small subunit phrog_606 terminase small subunit head and packaging 1 9091 9615
APC44931.1 KX828710_p34 hypothetical protein phrog_264 major head protein head and packaging 1 15838 16797
APC44961.1 KX828710_p38 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 17860 18396
APC44980.1 KX828710_p20 hypothetical protein phrog_10456 unknown function unknown function 1 7302 7511
APC44936.1 KX828710_p56 hypothetical protein phrog_2856 transcriptional regulator transcription regulation -1 35999 36451
APC44958.1 KX828710_p41 hypothetical protein phrog_569 tail length tape measure protein tail 1 19569 19886
APC44962.1 KX828710_p25 hypothetical protein phrog_2919 unknown function unknown function 1 8592 8777
APC44926.1 KX828710_p76 hypothetical protein phrog_6503 unknown function unknown function -1 47419 47619
APC44977.1 KX828710_p63 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 40842 41993
APC44923.1 KX828710_p82 DNA methylase phrog_757 DNA methyltransferase other -1 49159 49863
APC44916.1 KX828710_p3 hypothetical protein phrog_7421 unknown function unknown function 1 895 1089
APC44921.1 KX828710_p53 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 32763 33188
APC44987.1 KX828710_p79 hypothetical protein phrog_29431 unknown function unknown function -1 48294 48629
APC44911.1 KX828710_p6 hypothetical protein phrog_6080 unknown function unknown function 1 1875 2102
APC44932.1 KX828710_p62 hypothetical protein phrog_4596 unknown function unknown function 1 40362 40763
APC44963.1 KX828710_p47 tail assembly protein phrog_32 tail assembly protein tail 1 25061 25660
APC44982.1 KX828710_p16 hypothetical protein phrog_11330 unknown function unknown function 1 5209 5427
APC44967.1 KX828710_p68 hypothetical protein phrog_27210 unknown function unknown function -1 43469 43684
APC44985.1 KX828710_p48 tail fiber protein phrog_31 central tail fiber J tail 1 25738 29187
APC44934.1 KX828710_p26 hypothetical protein phrog_5976 unknown function unknown function 1 8779 9006