| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX828710 |
Definition |
Shigella phage SH6, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus SH6. |
DB of origin |
NUCCORE |
Length |
50552 |
Host Name |
Shigella sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
82 |
%GC |
45.82 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APC44928.1 | KX828710_p51 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 30930 | 31994 |
| APC44933.1 | KX828710_p73 | hypothetical protein | phrog_4344 | unknown function | unknown function | -1 | 46641 | 46865 |
| APC44939.1 | KX828710_p52 | recombination | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32069 | 32716 |
| APC44941.1 | KX828710_p50 | lipoprotein | phrog_4281 | unknown function | unknown function | -1 | 30174 | 30404 |
| APC44920.1 | KX828710_p77 | hypothetical protein | phrog_11577 | unknown function | unknown function | -1 | 47612 | 47983 |
| APC44945.1 | KX828710_p69 | hypothetical protein | phrog_2794 | unknown function | unknown function | -1 | 43874 | 44281 |
| APC44918.1 | KX828710_p24 | hypothetical protein | phrog_6666 | unknown function | unknown function | 1 | 8450 | 8611 |
| APC44951.1 | KX828710_p67 | spanin | phrog_1804 | Rz-like spanin | lysis | 1 | 43055 | 43456 |
| APC44969.1 | KX828710_p70 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 44286 | 45854 |
| APC44942.1 | KX828710_p29 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 11227 | 12561 |
| APC44914.1 | KX828710_p59 | DNA methylase | phrog_111 | DNA methyltransferase | other | 1 | 39044 | 39757 |
| APC44909.1 | KX828710_p45 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 23521 | 24333 |
| APC44913.1 | KX828710_p14 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 4138 | 4425 |
| APC44948.1 | KX828710_p22 | hypothetical protein | phrog_303 | unknown function | unknown function | 1 | 7852 | 8082 |
| APC44927.1 | KX828710_p74 | hypothetical protein | phrog_3955 | unknown function | unknown function | -1 | 46943 | 47086 |
| APC44986.1 | KX828710_p37 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 17580 | 17960 |
| APC44959.1 | KX828710_p55 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 35002 | 35922 |
| APC44952.1 | KX828710_p72 | hypothetical protein | phrog_9085 | unknown function | unknown function | -1 | 46428 | 46637 |
| APC44984.1 | KX828710_p11 | hypothetical protein | phrog_7116 | unknown function | unknown function | 1 | 3212 | 3718 |
| APC44972.1 | KX828710_p31 | major capsid protein | phrog_530 | head maturation protease | head and packaging | 1 | 13315 | 14427 |
| APC44974.1 | KX828710_p44 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 23118 | 23471 |
| APC44947.1 | KX828710_p43 | tail tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 20242 | 23115 |
| APC44960.1 | KX828710_p18 | hypothetical protein | phrog_415 | polynucleotide kinase | other | 1 | 6015 | 6548 |
| APC44915.1 | KX828710_p64 | hypothetical protein | phrog_4788 | unknown function | unknown function | 1 | 42057 | 42233 |
| APC44955.1 | KX828710_p32 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 14439 | 14915 |
| APC44949.1 | KX828710_p80 | hypothetical protein | phrog_3623 | unknown function | unknown function | -1 | 48712 | 48897 |
| APC44907.1 | KX828710_p61 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 40057 | 40281 |
| APC44966.1 | KX828710_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2122 | 2379 |
| APC44910.1 | KX828710_p19 | kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 6657 | 7229 |
| APC44912.1 | KX828710_p36 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 17179 | 17589 |
| APC44964.1 | KX828710_p4 | hypothetical protein | phrog_12951 | unknown function | unknown function | 1 | 1092 | 1559 |
| APC44981.1 | KX828710_p9 | hypothetical protein | phrog_11551 | unknown function | unknown function | 1 | 2389 | 2580 |
| APC44937.1 | KX828710_p13 | hypothetical protein | phrog_18601 | unknown function | unknown function | 1 | 3948 | 4154 |
| APC44968.1 | KX828710_p65 | holin | phrog_2877 | holin | lysis | 1 | 42352 | 42567 |
| APC44978.1 | KX828710_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6 | 581 |
| APC44965.1 | KX828710_p35 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 16847 | 17134 |
| APC44976.1 | KX828710_p57 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 36551 | 38563 |
| APC44938.1 | KX828710_p40 | major tail protein | phrog_584 | major tail protein | tail | 1 | 18787 | 19455 |
| APC44957.1 | KX828710_p5 | hypothetical protein | phrog_11449 | unknown function | unknown function | 1 | 1638 | 1868 |
| APC44983.1 | KX828710_p33 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 14978 | 15745 |
| APC44935.1 | KX828710_p75 | hypothetical protein | phrog_10555 | unknown function | unknown function | -1 | 47083 | 47403 |
| APC44930.1 | KX828710_p17 | hypothetical protein | phrog_10642 | unknown function | unknown function | 1 | 5485 | 5931 |
| APC44953.1 | KX828710_p28 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 9640 | 11223 |
| APC44929.1 | KX828710_p2 | hypothetical protein | phrog_35072 | unknown function | unknown function | 1 | 584 | 823 |
| APC44924.1 | KX828710_p42 | tape measure chaperone | phrog_680 | tail length tape measure protein | tail | 1 | 20006 | 20203 |
| APC44946.1 | KX828710_p60 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 39754 | 40005 |
| APC44950.1 | KX828710_p21 | hypothetical protein | phrog_9709 | unknown function | unknown function | 1 | 7508 | 7852 |
| APC44917.1 | KX828710_p54 | tail fiber protein | phrog_1980 | tail fiber protein | tail | -1 | 33222 | 34901 |
| APC44956.1 | KX828710_p71 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 45931 | 46347 |
| APC44970.1 | KX828710_p12 | hypothetical protein | phrog_5579 | unknown function | unknown function | 1 | 3718 | 3867 |
| APC44940.1 | KX828710_p23 | hypothetical protein | phrog_4927 | unknown function | unknown function | 1 | 8082 | 8285 |
| APC44973.1 | KX828710_p10 | hypothetical protein | phrog_9595 | unknown function | unknown function | 1 | 2652 | 3140 |
| APC44975.1 | KX828710_p49 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 29215 | 30171 |
| APC44971.1 | KX828710_p78 | hypothetical protein | phrog_13365 | unknown function | unknown function | -1 | 47988 | 48218 |
| APC44954.1 | KX828710_p81 | hypothetical protein | phrog_7717 | unknown function | unknown function | -1 | 48913 | 49098 |
| APC44925.1 | KX828710_p39 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 18386 | 18784 |
| APC44988.1 | KX828710_p15 | hypothetical protein | phrog_10580 | unknown function | unknown function | 1 | 4422 | 5060 |
| APC44922.1 | KX828710_p30 | minor capsid protein | phrog_324 | head morphogenesis | head and packaging | 1 | 12551 | 13312 |
| APC44908.1 | KX828710_p66 | endolysin | phrog_7 | endolysin | lysis | 1 | 42567 | 43055 |
| APC44943.1 | KX828710_p58 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 38560 | 38976 |
| APC44979.1 | KX828710_p7 | hypothetical protein | phrog_25570 | unknown function | unknown function | 1 | 2099 | 2209 |
| APC44919.1 | KX828710_p46 | minor tail protein | phrog_30 | minor tail protein | tail | 1 | 24330 | 25064 |
| APC44944.1 | KX828710_p27 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 9091 | 9615 |
| APC44931.1 | KX828710_p34 | hypothetical protein | phrog_264 | major head protein | head and packaging | 1 | 15838 | 16797 |
| APC44961.1 | KX828710_p38 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 17860 | 18396 |
| APC44980.1 | KX828710_p20 | hypothetical protein | phrog_10456 | unknown function | unknown function | 1 | 7302 | 7511 |
| APC44936.1 | KX828710_p56 | hypothetical protein | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 35999 | 36451 |
| APC44958.1 | KX828710_p41 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 19569 | 19886 |
| APC44962.1 | KX828710_p25 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 8592 | 8777 |
| APC44926.1 | KX828710_p76 | hypothetical protein | phrog_6503 | unknown function | unknown function | -1 | 47419 | 47619 |
| APC44977.1 | KX828710_p63 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40842 | 41993 |
| APC44923.1 | KX828710_p82 | DNA methylase | phrog_757 | DNA methyltransferase | other | -1 | 49159 | 49863 |
| APC44916.1 | KX828710_p3 | hypothetical protein | phrog_7421 | unknown function | unknown function | 1 | 895 | 1089 |
| APC44921.1 | KX828710_p53 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 32763 | 33188 |
| APC44987.1 | KX828710_p79 | hypothetical protein | phrog_29431 | unknown function | unknown function | -1 | 48294 | 48629 |
| APC44911.1 | KX828710_p6 | hypothetical protein | phrog_6080 | unknown function | unknown function | 1 | 1875 | 2102 |
| APC44932.1 | KX828710_p62 | hypothetical protein | phrog_4596 | unknown function | unknown function | 1 | 40362 | 40763 |
| APC44963.1 | KX828710_p47 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 25061 | 25660 |
| APC44982.1 | KX828710_p16 | hypothetical protein | phrog_11330 | unknown function | unknown function | 1 | 5209 | 5427 |
| APC44967.1 | KX828710_p68 | hypothetical protein | phrog_27210 | unknown function | unknown function | -1 | 43469 | 43684 |
| APC44985.1 | KX828710_p48 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 25738 | 29187 |
| APC44934.1 | KX828710_p26 | hypothetical protein | phrog_5976 | unknown function | unknown function | 1 | 8779 | 9006 |