functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
KX855962 |
Definition |
Arthrobacter phage HumptyDumpty, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Radnorvirus; unclassified Radnorvirus. |
DB of origin |
NUCCORE |
Length |
69978 |
Host Name |
Arthrobacter sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
111 |
%GC |
61.68 |
Number of singletons |
0 |
Number of paralogs |
1 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
APC44904.1 | KX855962_p111 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 69584 | 69922 |
APC44820.1 | KX855962_p25 | hypothetical protein | phrog_5161 | unknown function | unknown function | 1 | 21284 | 21688 |
APC44837.1 | KX855962_p42 | hypothetical protein | phrog_9274 | unknown function | unknown function | 1 | 34279 | 34506 |
APC44877.1 | KX855962_p83 | hypothetical protein | phrog_8619 | unknown function | unknown function | 1 | 55852 | 56424 |
APC44851.1 | KX855962_p56 | hypothetical protein | phrog_8744 | unknown function | unknown function | 1 | 41871 | 42380 |
APC44905.1 | KX855962_p70 | hypothetical protein | phrog_10249 | unknown function | unknown function | 1 | 47615 | 47845 |
APC44842.1 | KX855962_p47 | ssDNA binding protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 37420 | 38379 |
APC44903.1 | KX855962_p110 | protease domain protein | phrog_8478 | amidase | lysis | 1 | 69049 | 69600 |
APC44839.1 | KX855962_p44 | helix-turn-helix DNA binding domain protein | phrog_8615 | unknown function | unknown function | 1 | 35772 | 36026 |
APC44807.1 | KX855962_p12 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 9680 | 10576 |
APC44864.1 | KX855962_p69 | hypothetical protein | phrog_8388 | unknown function | unknown function | 1 | 47167 | 47592 |
APC44857.1 | KX855962_p62 | hypothetical protein | phrog_7014 | unknown function | unknown function | 1 | 44665 | 44814 |
APC44893.1 | KX855962_p100 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 63534 | 64028 |
APC44852.1 | KX855962_p57 | hypothetical protein | phrog_8331 | unknown function | unknown function | 1 | 42373 | 42768 |
APC44867.1 | KX855962_p73 | hypothetical protein | phrog_8686 | unknown function | unknown function | 1 | 48737 | 49294 |
APC44806.1 | KX855962_p11 | capsid decoration protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 9275 | 9655 |
APC44890.1 | KX855962_p96 | hypothetical protein | phrog_8648 | unknown function | unknown function | 1 | 62301 | 62498 |
APC44829.1 | KX855962_p34 | hypothetical protein | phrog_9234 | unknown function | unknown function | -1 | 28950 | 29111 |
APC44888.1 | KX855962_p94 | hypothetical protein | phrog_9161 | unknown function | unknown function | 1 | 61627 | 61908 |
APC44885.1 | KX855962_p91 | hypothetical protein | phrog_8377 | unknown function | unknown function | 1 | 60463 | 60675 |
APC44856.1 | KX855962_p61 | hypothetical protein | phrog_8799 | unknown function | unknown function | 1 | 43689 | 44675 |
APC44881.1 | KX855962_p87 | hypothetical protein | phrog_8410 | unknown function | unknown function | 1 | 57636 | 57935 |
APC44831.1 | KX855962_p36 | hypothetical protein | phrog_8361 | unknown function | unknown function | -1 | 29550 | 30104 |
APC44799.1 | KX855962_p4 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 2813 | 4237 |
APC44876.1 | KX855962_p82 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 53872 | 55794 |
APC44874.1 | KX855962_p80 | cytosine DNA methylase | phrog_363 | DNA methyltransferase | other | 1 | 51699 | 52556 |
APC44830.1 | KX855962_p35 | hypothetical protein | phrog_9254 | unknown function | unknown function | -1 | 29206 | 29517 |
APC44841.1 | KX855962_p46 | endonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 36470 | 37423 |
APC44823.1 | KX855962_p28 | hypothetical protein | phrog_4565 | unknown function | unknown function | 1 | 25642 | 25932 |
APC44870.1 | KX855962_p76 | hypothetical protein | phrog_9855 | unknown function | unknown function | 1 | 49686 | 49883 |
APC44895.1 | KX855962_p102 | hypothetical protein | phrog_8556 | unknown function | unknown function | 1 | 64868 | 65593 |
APC44891.1 | KX855962_p97 | hypothetical protein | phrog_6641 | secreted protein | other | 1 | 62495 | 62878 |
APC44872.1 | KX855962_p78 | hypothetical protein | phrog_8725 | unknown function | unknown function | 1 | 50473 | 51231 |
APC44812.1 | KX855962_p17 | hypothetical protein | phrog_8507 | unknown function | unknown function | 1 | 12614 | 12895 |
APC44875.1 | KX855962_p81 | DNA methyltransferase domain protein | phrog_1008 | DNA methyltransferase | other | 1 | 52519 | 53796 |
APC44868.1 | KX855962_p74 | hypothetical protein | phrog_9127 | unknown function | unknown function | 1 | 49281 | 49448 |
APC44805.1 | KX855962_p10 | capsid maturation protease | phrog_3894 | head maturation protease | head and packaging | 1 | 7817 | 9271 |
APC44894.1 | KX855962_p101 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 64018 | 64587 |
APC44882.1 | KX855962_p88 | hypothetical protein | phrog_8675 | unknown function | unknown function | 1 | 57996 | 58319 |
APC44833.1 | KX855962_p38 | baseplate wedge protein | phrog_5026 | baseplate protein | tail | 1 | 30495 | 30833 |
APC44822.1 | KX855962_p27 | tail protein | phrog_5231 | unknown function | unknown function | 1 | 23708 | 25645 |
APC44861.1 | KX855962_p66 | hypothetical protein | phrog_8876 | unknown function | unknown function | 1 | 45452 | 45640 |
APC44879.1 | KX855962_p85 | hypothetical protein | phrog_8751 | unknown function | unknown function | 1 | 56845 | 57204 |
APC44840.1 | KX855962_p45 | hypothetical protein | phrog_8731 | unknown function | unknown function | 1 | 36051 | 36473 |
APC44847.1 | KX855962_p52 | hypothetical protein | phrog_8385 | unknown function | unknown function | 1 | 40043 | 40402 |
APC44887.1 | KX855962_p93 | hypothetical protein | phrog_8528 | unknown function | unknown function | 1 | 61024 | 61623 |
APC44860.1 | KX855962_p65 | hypothetical protein | phrog_7014 | unknown function | unknown function | 1 | 45295 | 45468 |
APC44878.1 | KX855962_p84 | hypothetical protein | phrog_8502 | unknown function | unknown function | 1 | 56421 | 56858 |
APC44900.1 | KX855962_p107 | hypothetical protein | phrog_8530 | unknown function | unknown function | 1 | 68063 | 68455 |
APC44855.1 | KX855962_p60 | hypothetical protein | phrog_8413 | unknown function | unknown function | 1 | 43449 | 43688 |
APC44902.1 | KX855962_p109 | hypothetical protein | phrog_9617 | unknown function | unknown function | 1 | 68727 | 69020 |
APC44854.1 | KX855962_p59 | hypothetical protein | phrog_8327 | unknown function | unknown function | 1 | 42953 | 43456 |
APC44800.1 | KX855962_p5 | capsid morphogenesis protein | phrog_595 | head maturation protease | head and packaging | 1 | 4243 | 6222 |
APC44899.1 | KX855962_p106 | hypothetical protein | phrog_8795 | unknown function | unknown function | 1 | 67643 | 67990 |
APC44825.1 | KX855962_p30 | hypothetical protein | phrog_5480 | unknown function | unknown function | 1 | 26144 | 26548 |
APC44863.1 | KX855962_p68 | hypothetical protein | phrog_4657 | unknown function | unknown function | 1 | 46316 | 47170 |
APC44849.1 | KX855962_p54 | hypothetical protein | phrog_8694 | unknown function | unknown function | 1 | 41112 | 41576 |
APC44824.1 | KX855962_p29 | hypothetical protein | phrog_5303 | unknown function | unknown function | 1 | 25929 | 26147 |
APC44810.1 | KX855962_p15 | minor tail protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 11508 | 11978 |
APC44853.1 | KX855962_p58 | hypothetical protein | phrog_2864 | unknown function | unknown function | 1 | 42765 | 42956 |
APC44889.1 | KX855962_p95 | resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 61895 | 62308 |
APC44883.1 | KX855962_p89 | endonuclease | phrog_5928 | unknown function | unknown function | 1 | 58350 | 58724 |
APC44808.1 | KX855962_p13 | hypothetical protein | phrog_8546 | unknown function | unknown function | 1 | 10579 | 10980 |
APC44804.1 | KX855962_p9 | hypothetical protein | phrog_8348 | unknown function | unknown function | 1 | 7427 | 7810 |
APC44862.1 | KX855962_p67 | hypothetical protein | phrog_9166 | unknown function | unknown function | 1 | 45777 | 46319 |
APC44880.1 | KX855962_p86 | hypothetical protein | phrog_9063 | unknown function | unknown function | 1 | 57197 | 57646 |
APC44821.1 | KX855962_p26 | tail protein | phrog_5207 | unknown function | unknown function | 1 | 21685 | 23655 |
APC44815.1 | KX855962_p20 | hypothetical protein | phrog_5088 | tail assembly chaperone | tail | 1 | 14906 | 15529 |
APC44801.1 | KX855962_p6 | immunity protein domain | phrog_3585 | immunity protein | other | 1 | 6253 | 6579 |
APC44897.1 | KX855962_p104 | DNA polymerase III subunit beta | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 65933 | 67048 |
APC44798.1 | KX855962_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1291 | 2769 |
APC44901.1 | KX855962_p108 | helix-turn-helix DNA binding domain protein | phrog_7351 | unknown function | unknown function | 1 | 68579 | 68722 |
APC44835.1 | KX855962_p40 | hypothetical protein | phrog_7455 | tail protein | tail | 1 | 31957 | 33822 |
APC44906.1 | KX855962_p98 | hypothetical protein | phrog_17294 | unknown function | unknown function | 1 | 63024 | 63287 |
APC44834.1 | KX855962_p39 | baseplate J-like protein | phrog_6 | baseplate wedge subunit | tail | 1 | 30826 | 31947 |
APC44844.1 | KX855962_p49 | hypothetical protein | phrog_9387 | unknown function | unknown function | 1 | 38569 | 38835 |
APC44865.1 | KX855962_p71 | hypothetical protein | phrog_8715 | unknown function | unknown function | 1 | 47859 | 48287 |
APC44826.1 | KX855962_p31 | endolysin | phrog_291 | endolysin | lysis | 1 | 26545 | 28200 |
APC44811.1 | KX855962_p16 | hypothetical protein | phrog_5178 | unknown function | unknown function | 1 | 11978 | 12595 |
APC44869.1 | KX855962_p75 | hypothetical protein | phrog_9916 | unknown function | unknown function | 1 | 49445 | 49681 |
APC44828.1 | KX855962_p33 | hypothetical protein | phrog_1933 | unknown function | unknown function | -1 | 28739 | 28957 |
APC44858.1 | KX855962_p63 | hypothetical protein | phrog_13067 | unknown function | unknown function | 1 | 44804 | 44905 |
APC44816.1 | KX855962_p21 | hypothetical protein | phrog_8820 | unknown function | unknown function | 1 | 15574 | 15711 |
APC44832.1 | KX855962_p37 | helix-turn-helix DNA binding domain protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30165 | 30383 |
APC44848.1 | KX855962_p53 | hypothetical protein | phrog_8739 | unknown function | unknown function | 1 | 40399 | 41115 |
APC44827.1 | KX855962_p32 | holin | phrog_8269 | holin | lysis | 1 | 28215 | 28685 |
APC44797.1 | KX855962_p2 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 657 | 1310 |
APC44896.1 | KX855962_p103 | hypothetical protein | phrog_8433 | unknown function | unknown function | 1 | 65681 | 65920 |
APC44898.1 | KX855962_p105 | hypothetical protein | phrog_5845 | unknown function | unknown function | 1 | 67200 | 67646 |
APC44809.1 | KX855962_p14 | hypothetical protein | phrog_5280 | unknown function | unknown function | 1 | 11001 | 11504 |
APC44859.1 | KX855962_p64 | hypothetical protein | phrog_9156 | unknown function | unknown function | 1 | 44902 | 45264 |
APC44871.1 | KX855962_p77 | hypothetical protein | phrog_8606 | unknown function | unknown function | 1 | 49880 | 50476 |
APC44886.1 | KX855962_p92 | nucleotidyl transferase | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 60665 | 61027 |
APC44884.1 | KX855962_p90 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 58721 | 60466 |
APC44850.1 | KX855962_p55 | hypothetical protein | phrog_9663 | unknown function | unknown function | 1 | 41680 | 41856 |
APC44846.1 | KX855962_p51 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 39217 | 39735 |
APC44803.1 | KX855962_p8 | hypothetical protein | phrog_10034 | unknown function | unknown function | 1 | 6965 | 7420 |
APC44802.1 | KX855962_p7 | hypothetical protein | phrog_9140 | unknown function | unknown function | 1 | 6723 | 6953 |
APC44843.1 | KX855962_p48 | hypothetical protein | phrog_9097 | unknown function | unknown function | 1 | 38414 | 38566 |
APC44873.1 | KX855962_p79 | hypothetical protein | phrog_6326 | unknown function | unknown function | 1 | 51228 | 51620 |
APC44813.1 | KX855962_p18 | tail sheath protein | phrog_23 | tail sheath | tail | 1 | 12899 | 14347 |
APC44796.1 | KX855962_p1 | hypothetical protein | phrog_5264 | unknown function | unknown function | 1 | 1 | 660 |
APC44838.1 | KX855962_p43 | DNA repair protein | phrog_1499 | unknown function | unknown function | 1 | 34534 | 35769 |
APC44817.1 | KX855962_p22 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 15721 | 19263 |
APC44818.1 | KX855962_p23 | LysM-like endolysin | phrog_380 | endolysin | lysis | 1 | 19264 | 19932 |
APC44866.1 | KX855962_p72 | endolysin domain protein | phrog_8605 | endolysin | lysis | 1 | 48280 | 48747 |
APC44892.1 | KX855962_p99 | hypothetical protein | phrog_9956 | unknown function | unknown function | 1 | 63161 | 63544 |
APC44814.1 | KX855962_p19 | tail tube protein | phrog_5102 | tail tube protein | tail | 1 | 14370 | 14774 |
APC44819.1 | KX855962_p24 | tail protein | phrog_52 | tail protein | tail | 1 | 19938 | 21281 |
APC44845.1 | KX855962_p50 | hypothetical protein | phrog_8370 | unknown function | unknown function | 1 | 38832 | 39149 |
APC44836.1 | KX855962_p41 | hypothetical protein | phrog_9333 | unknown function | unknown function | 1 | 34043 | 34282 |