Genomic map of Liberibacter phage HHCA1-2 (KX879602)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX879602
Definition
Liberibacter phage HHCA1-2, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
38989
Host Name
Candidatus Liberibacter asiaticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
44
%GC
39.31
Number of singletons
0
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APD21493.1 KX879602_p18 hypothetical protein phrog_17944 unknown function unknown function 1 20681 20902
APD21492.1 KX879602_p17 hypothetical protein phrog_8 transcriptional regulator transcription regulation -1 19926 20471
APD21488.1 KX879602_p13 hypothetical protein phrog_14772 unknown function unknown function -1 14126 14398
APD21495.1 KX879602_p20 hypothetical protein phrog_21105 unknown function unknown function 1 21514 21720
APD21498.1 KX879602_p23 hypothetical protein phrog_18707 anti-repressor transcription regulation 1 22401 22586
APD21510.1 KX879602_p35 endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 32392 32703
APD21485.1 KX879602_p10 hypothetical protein phrog_394 tail protein tail -1 11815 12330
APD21505.1 KX879602_p30 hypothetical protein phrog_16052 unknown function unknown function 1 27119 27442
APD21482.1 KX879602_p7 hypothetical protein phrog_18250 integrase integration and excision -1 7829 8317
APD21500.1 KX879602_p25 primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 23209 25581
APD21494.1 KX879602_p19 hypothetical protein phrog_9679 unknown function unknown function 1 20985 21377
APD21507.1 KX879602_p32 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 28907 29695
APD21516.1 KX879602_p41 hypothetical protein phrog_6637 unknown function unknown function -1 36725 37198
APD21477.1 KX879602_p2 hypothetical protein phrog_12290 unknown function unknown function -1 484 756
APD21513.1 KX879602_p38 guanylate kinase phrog_1815 guanylate kinase other 1 34427 34999
APD21508.1 KX879602_p33 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 29714 30364
APD21484.1 KX879602_p9 hypothetical protein phrog_376 tail protein tail -1 10050 11822
APD21489.1 KX879602_p14 head-to-tail joining protein phrog_332 head-tail adaptor connector -1 14395 16014
APD21479.1 KX879602_p4 hypothetical protein phrog_684 virion structural protein head and packaging -1 1930 4359
APD21503.1 KX879602_p28 hypothetical protein phrog_22702 unknown function unknown function -1 26192 26461
APD21509.1 KX879602_p34 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 30368 32395
APD21481.1 KX879602_p6 hypothetical protein phrog_992 head protein head and packaging -1 5566 7512
APD21478.1 KX879602_p3 hypothetical protein phrog_15612 unknown function unknown function -1 749 1933
APD21519.1 KX879602_p44 hypothetical protein phrog_26356 unknown function unknown function 1 38035 38979
APD21515.1 KX879602_p40 collagen triple helix repeat protein phrog_6320 tail fiber protein tail 1 35722 36669
APD21517.1 KX879602_p42 hypothetical protein phrog_12290 unknown function unknown function -1 37195 37467
APD21512.1 KX879602_p37 DNA ligase phrog_18456 DNA ligase DNA, RNA and nucleotide metabolism 1 34066 34425
APD21506.1 KX879602_p31 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 27570 28736
APD21501.1 KX879602_p26 hypothetical protein phrog_17714 unknown function unknown function -1 25582 25971
APD21491.1 KX879602_p16 hypothetical protein phrog_1482 terminase small subunit head and packaging -1 18102 18590
APD21490.1 KX879602_p15 terminase large subunit phrog_2 terminase large subunit head and packaging -1 16017 17513
APD21487.1 KX879602_p12 hypothetical protein phrog_18242 protease other -1 13374 14114
APD21483.1 KX879602_p8 hypothetical protein phrog_21225 exonuclease DNA, RNA and nucleotide metabolism -1 8319 10043
APD21497.1 KX879602_p22 hypothetical protein phrog_5070 unknown function unknown function 1 21956 22288
APD21518.1 KX879602_p43 hypothetical protein phrog_27382 unknown function unknown function -1 37555 37659
APD21502.1 KX879602_p27 hypothetical protein phrog_16809 unknown function unknown function -1 25989 26195
APD21514.1 KX879602_p39 hypothetical protein phrog_20262 unknown function unknown function 1 35071 35511
APD21476.1 KX879602_p1 hypothetical protein phrog_6637 unknown function unknown function -1 11 487
APD21511.1 KX879602_p36 SNF2 dead box helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 32688 34073
APD21486.1 KX879602_p11 major capsid protein phrog_3437 major head protein head and packaging -1 12330 13361
APD21504.1 KX879602_p29 hypothetical protein phrog_9679 unknown function unknown function 1 26658 27029
APD21496.1 KX879602_p21 hypothetical protein phrog_20149 unknown function unknown function 1 21800 21955
APD21499.1 KX879602_p24 hypothetical protein phrog_9415 unknown function unknown function -1 22817 23161
APD21480.1 KX879602_p5 hypothetical protein phrog_14422 unknown function unknown function -1 4359 5582