| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX879602 |
Definition |
Liberibacter phage HHCA1-2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
38989 |
Host Name |
Candidatus Liberibacter asiaticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
44 |
%GC |
39.31 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD21493.1 | KX879602_p18 | hypothetical protein | phrog_17944 | unknown function | unknown function | 1 | 20681 | 20902 |
| APD21492.1 | KX879602_p17 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 19926 | 20471 |
| APD21488.1 | KX879602_p13 | hypothetical protein | phrog_14772 | unknown function | unknown function | -1 | 14126 | 14398 |
| APD21495.1 | KX879602_p20 | hypothetical protein | phrog_21105 | unknown function | unknown function | 1 | 21514 | 21720 |
| APD21498.1 | KX879602_p23 | hypothetical protein | phrog_18707 | anti-repressor | transcription regulation | 1 | 22401 | 22586 |
| APD21510.1 | KX879602_p35 | endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 32392 | 32703 |
| APD21485.1 | KX879602_p10 | hypothetical protein | phrog_394 | tail protein | tail | -1 | 11815 | 12330 |
| APD21505.1 | KX879602_p30 | hypothetical protein | phrog_16052 | unknown function | unknown function | 1 | 27119 | 27442 |
| APD21482.1 | KX879602_p7 | hypothetical protein | phrog_18250 | integrase | integration and excision | -1 | 7829 | 8317 |
| APD21500.1 | KX879602_p25 | primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 23209 | 25581 |
| APD21494.1 | KX879602_p19 | hypothetical protein | phrog_9679 | unknown function | unknown function | 1 | 20985 | 21377 |
| APD21507.1 | KX879602_p32 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 28907 | 29695 |
| APD21516.1 | KX879602_p41 | hypothetical protein | phrog_6637 | unknown function | unknown function | -1 | 36725 | 37198 |
| APD21477.1 | KX879602_p2 | hypothetical protein | phrog_12290 | unknown function | unknown function | -1 | 484 | 756 |
| APD21513.1 | KX879602_p38 | guanylate kinase | phrog_1815 | guanylate kinase | other | 1 | 34427 | 34999 |
| APD21508.1 | KX879602_p33 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 29714 | 30364 |
| APD21484.1 | KX879602_p9 | hypothetical protein | phrog_376 | tail protein | tail | -1 | 10050 | 11822 |
| APD21489.1 | KX879602_p14 | head-to-tail joining protein | phrog_332 | head-tail adaptor | connector | -1 | 14395 | 16014 |
| APD21479.1 | KX879602_p4 | hypothetical protein | phrog_684 | virion structural protein | head and packaging | -1 | 1930 | 4359 |
| APD21503.1 | KX879602_p28 | hypothetical protein | phrog_22702 | unknown function | unknown function | -1 | 26192 | 26461 |
| APD21509.1 | KX879602_p34 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 30368 | 32395 |
| APD21481.1 | KX879602_p6 | hypothetical protein | phrog_992 | head protein | head and packaging | -1 | 5566 | 7512 |
| APD21478.1 | KX879602_p3 | hypothetical protein | phrog_15612 | unknown function | unknown function | -1 | 749 | 1933 |
| APD21519.1 | KX879602_p44 | hypothetical protein | phrog_26356 | unknown function | unknown function | 1 | 38035 | 38979 |
| APD21515.1 | KX879602_p40 | collagen triple helix repeat protein | phrog_6320 | tail fiber protein | tail | 1 | 35722 | 36669 |
| APD21517.1 | KX879602_p42 | hypothetical protein | phrog_12290 | unknown function | unknown function | -1 | 37195 | 37467 |
| APD21512.1 | KX879602_p37 | DNA ligase | phrog_18456 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 34066 | 34425 |
| APD21506.1 | KX879602_p31 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27570 | 28736 |
| APD21501.1 | KX879602_p26 | hypothetical protein | phrog_17714 | unknown function | unknown function | -1 | 25582 | 25971 |
| APD21491.1 | KX879602_p16 | hypothetical protein | phrog_1482 | terminase small subunit | head and packaging | -1 | 18102 | 18590 |
| APD21490.1 | KX879602_p15 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 16017 | 17513 |
| APD21487.1 | KX879602_p12 | hypothetical protein | phrog_18242 | protease | other | -1 | 13374 | 14114 |
| APD21483.1 | KX879602_p8 | hypothetical protein | phrog_21225 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 8319 | 10043 |
| APD21497.1 | KX879602_p22 | hypothetical protein | phrog_5070 | unknown function | unknown function | 1 | 21956 | 22288 |
| APD21518.1 | KX879602_p43 | hypothetical protein | phrog_27382 | unknown function | unknown function | -1 | 37555 | 37659 |
| APD21502.1 | KX879602_p27 | hypothetical protein | phrog_16809 | unknown function | unknown function | -1 | 25989 | 26195 |
| APD21514.1 | KX879602_p39 | hypothetical protein | phrog_20262 | unknown function | unknown function | 1 | 35071 | 35511 |
| APD21476.1 | KX879602_p1 | hypothetical protein | phrog_6637 | unknown function | unknown function | -1 | 11 | 487 |
| APD21511.1 | KX879602_p36 | SNF2 dead box helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 32688 | 34073 |
| APD21486.1 | KX879602_p11 | major capsid protein | phrog_3437 | major head protein | head and packaging | -1 | 12330 | 13361 |
| APD21504.1 | KX879602_p29 | hypothetical protein | phrog_9679 | unknown function | unknown function | 1 | 26658 | 27029 |
| APD21496.1 | KX879602_p21 | hypothetical protein | phrog_20149 | unknown function | unknown function | 1 | 21800 | 21955 |
| APD21499.1 | KX879602_p24 | hypothetical protein | phrog_9415 | unknown function | unknown function | -1 | 22817 | 23161 |
| APD21480.1 | KX879602_p5 | hypothetical protein | phrog_14422 | unknown function | unknown function | -1 | 4359 | 5582 |