| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX889068 |
Definition |
Vibrio phage pVa5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
78145 |
Host Name |
Vibrio splendidus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
106 |
%GC |
43.15 |
Number of singletons |
46 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APC46083.1 | KX889068_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67354 | 67617 |
| APC46053.1 | KX889068_p106 | ATP-dependent protease protein subunit | phrog_1827 | ATP-dependent protease | other | -1 | 77585 | 78145 |
| APC46032.1 | KX889068_p78 | RNA polymerase protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 68114 | 69328 |
| APC46027.1 | KX889068_p35 | Ribonucleotide-diposhpate reductase protein, subunit alpha | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 43965 | 45719 |
| APC46114.1 | KX889068_p12 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 12422 | 12610 |
| APC46122.1 | KX889068_p88 | hypothetical protein | phrog_14146 | unknown function | unknown function | -1 | 71351 | 71524 |
| APC46026.1 | KX889068_p33 | anaerobic ribonucleoside triphosphate reductase protein | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | -1 | 41183 | 43039 |
| APC46113.1 | KX889068_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48510 | 48704 |
| APC46108.1 | KX889068_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57654 | 57866 |
| APC46071.1 | KX889068_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52116 | 52454 |
| APC46047.1 | KX889068_p21 | structural protein | phrog_2050 | virion structural protein | head and packaging | 1 | 19891 | 20625 |
| APC46019.1 | KX889068_p25 | virion encapsulated RNA polymerase protein | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 24392 | 34426 |
| APC46061.1 | KX889068_p37 | phage DNA binding protein | phrog_715 | MazG-like pyrophosphatase | other | -1 | 46133 | 46555 |
| APC46068.1 | KX889068_p36 | hypothetical protein | phrog_37732 | unknown function | unknown function | -1 | 45777 | 46136 |
| APC46082.1 | KX889068_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51591 | 51854 |
| APC46058.1 | KX889068_p57 | hypothetical protein | phrog_33532 | unknown function | unknown function | -1 | 56617 | 57093 |
| APC46050.1 | KX889068_p1 | N4like protein | phrog_2109 | unknown function | unknown function | 1 | 86 | 781 |
| APC46095.1 | KX889068_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 71110 | 71349 |
| APC46021.1 | KX889068_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3014 | 5329 |
| APC46038.1 | KX889068_p61 | SPFH protein domain | phrog_200 | lipoprotein | other | -1 | 58082 | 59023 |
| APC46079.1 | KX889068_p96 | hypothetical protein | phrog_21486 | unknown function | unknown function | -1 | 73900 | 74172 |
| APC46069.1 | KX889068_p102 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75960 | 76307 |
| APC46121.1 | KX889068_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5326 | 5505 |
| APC46045.1 | KX889068_p28 | single-stranded DNA-binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 35310 | 36050 |
| APC46110.1 | KX889068_p63 | cold shock CspD protein | phrog_729 | cold shock protein | other | -1 | 59898 | 60104 |
| APC46120.1 | KX889068_p101 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75769 | 75948 |
| APC46052.1 | KX889068_p41 | HNH endonuclease protein | phrog_19902 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 47361 | 48017 |
| APC46118.1 | KX889068_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69340 | 69522 |
| APC46035.1 | KX889068_p65 | MoxR-like ATPase protein | phrog_1297 | ATPase | other | -1 | 60367 | 61386 |
| APC46025.1 | KX889068_p22 | N4protein | phrog_2220 | unknown function | unknown function | 1 | 20836 | 22710 |
| APC46057.1 | KX889068_p72 | HNH homing endonuclease protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 65990 | 66472 |
| APC46066.1 | KX889068_p26 | hypothetical protein | phrog_20916 | unknown function | unknown function | -1 | 34551 | 34916 |
| APC46029.1 | KX889068_p4 | N4like protein | phrog_38 | terminase large subunit | head and packaging | 1 | 1368 | 2972 |
| APC46090.1 | KX889068_p68 | hypothetical protein | phrog_21445 | unknown function | unknown function | -1 | 63909 | 64157 |
| APC46102.1 | KX889068_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70000 | 70224 |
| APC46080.1 | KX889068_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73191 | 73460 |
| APC46064.1 | KX889068_p66 | hypothetical protein | phrog_2018 | unknown function | unknown function | -1 | 61543 | 61920 |
| APC46088.1 | KX889068_p83 | hypothetical protein | phrog_29072 | unknown function | unknown function | -1 | 70221 | 70472 |
| APC46067.1 | KX889068_p14 | peptidase M15A protein | phrog_894 | endolysin | lysis | -1 | 12963 | 13325 |
| APC46123.1 | KX889068_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46548 | 46691 |
| ASV62327.1 | KX889068_p9 | hydrolase protein | singleton | unknown function | unknown function | 1 | 7938 | 10118 |
| APC46094.1 | KX889068_p103 | hypothetical protein | phrog_19839 | unknown function | unknown function | -1 | 76435 | 76677 |
| APC46099.1 | KX889068_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70875 | 71108 |
| APC46076.1 | KX889068_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54773 | 55057 |
| APC46046.1 | KX889068_p70 | HNH homing endonuclease protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 64566 | 65303 |
| APC46062.1 | KX889068_p27 | hollidat junction resolvase protein | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 34891 | 35310 |
| APC46103.1 | KX889068_p100 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75543 | 75767 |
| APC46030.1 | KX889068_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5604 | 7097 |
| APC46105.1 | KX889068_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66622 | 66840 |
| APC46073.1 | KX889068_p13 | hypothetical protein | phrog_19043 | unknown function | unknown function | 1 | 12610 | 12927 |
| APC46115.1 | KX889068_p104 | hypothetical protein | singleton | unknown function | unknown function | -1 | 76853 | 77041 |
| APC46097.1 | KX889068_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 72449 | 72685 |
| APC46054.1 | KX889068_p20 | N4 g55 protein | phrog_2130 | unknown function | unknown function | 1 | 19340 | 19891 |
| APC46028.1 | KX889068_p11 | phage tail fiber | singleton | unknown function | unknown function | 1 | 10719 | 12407 |
| APC46101.1 | KX889068_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66833 | 67060 |
| APC46098.1 | KX889068_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53963 | 54196 |
| APC46093.1 | KX889068_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70640 | 70882 |
| APC46041.1 | KX889068_p31 | hypothetical protein | phrog_19493 | unknown function | unknown function | -1 | 39312 | 40187 |
| APC46084.1 | KX889068_p49 | hypothetical protein | phrog_20260 | unknown function | unknown function | -1 | 52470 | 52730 |
| APC46109.1 | KX889068_p39 | hypothetical protein | phrog_236 | nucleotide kinase | other | -1 | 46681 | 46890 |
| APC46060.1 | KX889068_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57161 | 57598 |
| APC46116.1 | KX889068_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51856 | 52041 |
| APC46037.1 | KX889068_p34 | ribonucleotide reductase protein, small chain family | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 43036 | 43977 |
| APC46081.1 | KX889068_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1006 | 1275 |
| APC46078.1 | KX889068_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54196 | 54468 |
| APC46033.1 | KX889068_p50 | metallopeptidase protein domain | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 52764 | 53960 |
| APC46022.1 | KX889068_p30 | DNA primase protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37135 | 39300 |
| APC46040.1 | KX889068_p56 | hypothetical protein | phrog_23862 | unknown function | unknown function | 1 | 55700 | 56620 |
| APC46055.1 | KX889068_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74334 | 74849 |
| APC46070.1 | KX889068_p17 | endonuclease III protein | phrog_2346 | unknown function | unknown function | 1 | 16340 | 16678 |
| APC46034.1 | KX889068_p18 | tape measure protein | phrog_2120 | tail length tape measure protein | tail | 1 | 16678 | 17793 |
| APC46063.1 | KX889068_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65570 | 65986 |
| APC46096.1 | KX889068_p91 | hypothetical protein | singleton | unknown function | unknown function | -1 | 72687 | 72926 |
| APC46072.1 | KX889068_p105 | hypothetical protein | phrog_18963 | unknown function | unknown function | -1 | 77246 | 77584 |
| APC46106.1 | KX889068_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69584 | 69802 |
| APC46048.1 | KX889068_p29 | N4protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 36117 | 36842 |
| APC46112.1 | KX889068_p60 | hypothetical protein | phrog_27189 | unknown function | unknown function | -1 | 57866 | 58069 |
| APC46024.1 | KX889068_p67 | hypothetical protein | phrog_1735 | unknown function | unknown function | -1 | 61930 | 63909 |
| APC46091.1 | KX889068_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 768 | 1013 |
| APC46051.1 | KX889068_p23 | hypothetical protein | phrog_18869 | unknown function | unknown function | 1 | 22782 | 23471 |
| APC46117.1 | KX889068_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60150 | 60335 |
| APC46044.1 | KX889068_p15 | PhoH-like protein | phrog_170 | PhoH-like phosphate starvation-inducible | other | -1 | 13309 | 14052 |
| APC46124.1 | KX889068_p95 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73712 | 73840 |
| APC46075.1 | KX889068_p75 | hypothetical protein | phrog_29903 | unknown function | unknown function | -1 | 67053 | 67361 |
| APC46020.1 | KX889068_p45 | DNA Polymerase I protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 48979 | 51522 |
| APC46086.1 | KX889068_p94 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73462 | 73719 |
| APC46031.1 | KX889068_p19 | major coat protein | phrog_1357 | major head protein | head and packaging | 1 | 17805 | 19253 |
| APC46089.1 | KX889068_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 72938 | 73189 |
| APC46085.1 | KX889068_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67617 | 67874 |
| APC46074.1 | KX889068_p53 | hypothetical protein | phrog_21021 | unknown function | unknown function | -1 | 54465 | 54776 |
| APC46056.1 | KX889068_p55 | HNH homing endonuclease protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 55133 | 55615 |
| APC46119.1 | KX889068_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70465 | 70647 |
| APC46059.1 | KX889068_p10 | hypothetical protein | phrog_17691 | unknown function | unknown function | 1 | 10259 | 10708 |
| APC46107.1 | KX889068_p81 | hypothetical protein | phrog_20611 | unknown function | unknown function | -1 | 69789 | 70007 |
| APC46036.1 | KX889068_p32 | N4protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 40187 | 41170 |
| APC46092.1 | KX889068_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48287 | 48529 |
| APC46111.1 | KX889068_p99 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75231 | 75437 |
| APC46077.1 | KX889068_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48714 | 48995 |
| APC46065.1 | KX889068_p69 | srd postulated decoy protein | phrog_3118 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 64132 | 64500 |
| APC46043.1 | KX889068_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59048 | 59863 |
| APC46039.1 | KX889068_p89 | RNA polymerase protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 71514 | 72446 |
| APC46100.1 | KX889068_p98 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74999 | 75229 |
| APC46049.1 | KX889068_p8 | tail protein | phrog_2125 | virion structural protein | head and packaging | 1 | 7240 | 7947 |
| ASV62328.1 | KX889068_p40 | thymidilate synthase protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 46878 | 48287 |
| APC46023.1 | KX889068_p16 | N4protein | phrog_1216 | portal protein | head and packaging | 1 | 14141 | 16276 |
| APC46042.1 | KX889068_p24 | hypothetical protein | phrog_20377 | unknown function | unknown function | 1 | 23482 | 24339 |