Genomic map of Vibrio phage vB_VspP_pVa5 (KX889068)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX889068
Definition
Vibrio phage pVa5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
78145
Host Name
Vibrio splendidus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
106
%GC
43.15
Number of singletons
46
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APC46083.1 KX889068_p76 hypothetical protein singleton unknown function unknown function -1 67354 67617
APC46053.1 KX889068_p106 ATP-dependent protease protein subunit phrog_1827 ATP-dependent protease other -1 77585 78145
APC46032.1 KX889068_p78 RNA polymerase protein phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism -1 68114 69328
APC46027.1 KX889068_p35 Ribonucleotide-diposhpate reductase protein, subunit alpha phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 43965 45719
APC46114.1 KX889068_p12 hypothetical protein phrog_402 unknown function unknown function 1 12422 12610
APC46122.1 KX889068_p88 hypothetical protein phrog_14146 unknown function unknown function -1 71351 71524
APC46026.1 KX889068_p33 anaerobic ribonucleoside triphosphate reductase protein phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 41183 43039
APC46113.1 KX889068_p43 hypothetical protein singleton unknown function unknown function -1 48510 48704
APC46108.1 KX889068_p59 hypothetical protein singleton unknown function unknown function -1 57654 57866
APC46071.1 KX889068_p48 hypothetical protein singleton unknown function unknown function -1 52116 52454
APC46047.1 KX889068_p21 structural protein phrog_2050 virion structural protein head and packaging 1 19891 20625
APC46019.1 KX889068_p25 virion encapsulated RNA polymerase protein phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism 1 24392 34426
APC46061.1 KX889068_p37 phage DNA binding protein phrog_715 MazG-like pyrophosphatase other -1 46133 46555
APC46068.1 KX889068_p36 hypothetical protein phrog_37732 unknown function unknown function -1 45777 46136
APC46082.1 KX889068_p46 hypothetical protein singleton unknown function unknown function -1 51591 51854
APC46058.1 KX889068_p57 hypothetical protein phrog_33532 unknown function unknown function -1 56617 57093
APC46050.1 KX889068_p1 N4like protein phrog_2109 unknown function unknown function 1 86 781
APC46095.1 KX889068_p87 hypothetical protein singleton unknown function unknown function -1 71110 71349
APC46021.1 KX889068_p5 hypothetical protein singleton unknown function unknown function 1 3014 5329
APC46038.1 KX889068_p61 SPFH protein domain phrog_200 lipoprotein other -1 58082 59023
APC46079.1 KX889068_p96 hypothetical protein phrog_21486 unknown function unknown function -1 73900 74172
APC46069.1 KX889068_p102 hypothetical protein singleton unknown function unknown function -1 75960 76307
APC46121.1 KX889068_p6 hypothetical protein singleton unknown function unknown function 1 5326 5505
APC46045.1 KX889068_p28 single-stranded DNA-binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 35310 36050
APC46110.1 KX889068_p63 cold shock CspD protein phrog_729 cold shock protein other -1 59898 60104
APC46120.1 KX889068_p101 hypothetical protein singleton unknown function unknown function -1 75769 75948
APC46052.1 KX889068_p41 HNH endonuclease protein phrog_19902 HNH endonuclease DNA, RNA and nucleotide metabolism -1 47361 48017
APC46118.1 KX889068_p79 hypothetical protein singleton unknown function unknown function -1 69340 69522
APC46035.1 KX889068_p65 MoxR-like ATPase protein phrog_1297 ATPase other -1 60367 61386
APC46025.1 KX889068_p22 N4protein phrog_2220 unknown function unknown function 1 20836 22710
APC46057.1 KX889068_p72 HNH homing endonuclease protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism -1 65990 66472
APC46066.1 KX889068_p26 hypothetical protein phrog_20916 unknown function unknown function -1 34551 34916
APC46029.1 KX889068_p4 N4like protein phrog_38 terminase large subunit head and packaging 1 1368 2972
APC46090.1 KX889068_p68 hypothetical protein phrog_21445 unknown function unknown function -1 63909 64157
APC46102.1 KX889068_p82 hypothetical protein singleton unknown function unknown function -1 70000 70224
APC46080.1 KX889068_p93 hypothetical protein singleton unknown function unknown function -1 73191 73460
APC46064.1 KX889068_p66 hypothetical protein phrog_2018 unknown function unknown function -1 61543 61920
APC46088.1 KX889068_p83 hypothetical protein phrog_29072 unknown function unknown function -1 70221 70472
APC46067.1 KX889068_p14 peptidase M15A protein phrog_894 endolysin lysis -1 12963 13325
APC46123.1 KX889068_p38 hypothetical protein singleton unknown function unknown function -1 46548 46691
ASV62327.1 KX889068_p9 hydrolase protein singleton unknown function unknown function 1 7938 10118
APC46094.1 KX889068_p103 hypothetical protein phrog_19839 unknown function unknown function -1 76435 76677
APC46099.1 KX889068_p86 hypothetical protein singleton unknown function unknown function -1 70875 71108
APC46076.1 KX889068_p54 hypothetical protein singleton unknown function unknown function -1 54773 55057
APC46046.1 KX889068_p70 HNH homing endonuclease protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism -1 64566 65303
APC46062.1 KX889068_p27 hollidat junction resolvase protein phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 34891 35310
APC46103.1 KX889068_p100 hypothetical protein singleton unknown function unknown function -1 75543 75767
APC46030.1 KX889068_p7 hypothetical protein singleton unknown function unknown function 1 5604 7097
APC46105.1 KX889068_p73 hypothetical protein singleton unknown function unknown function -1 66622 66840
APC46073.1 KX889068_p13 hypothetical protein phrog_19043 unknown function unknown function 1 12610 12927
APC46115.1 KX889068_p104 hypothetical protein singleton unknown function unknown function -1 76853 77041
APC46097.1 KX889068_p90 hypothetical protein singleton unknown function unknown function -1 72449 72685
APC46054.1 KX889068_p20 N4 g55 protein phrog_2130 unknown function unknown function 1 19340 19891
APC46028.1 KX889068_p11 phage tail fiber singleton unknown function unknown function 1 10719 12407
APC46101.1 KX889068_p74 hypothetical protein singleton unknown function unknown function -1 66833 67060
APC46098.1 KX889068_p51 hypothetical protein singleton unknown function unknown function -1 53963 54196
APC46093.1 KX889068_p85 hypothetical protein singleton unknown function unknown function -1 70640 70882
APC46041.1 KX889068_p31 hypothetical protein phrog_19493 unknown function unknown function -1 39312 40187
APC46084.1 KX889068_p49 hypothetical protein phrog_20260 unknown function unknown function -1 52470 52730
APC46109.1 KX889068_p39 hypothetical protein phrog_236 nucleotide kinase other -1 46681 46890
APC46060.1 KX889068_p58 hypothetical protein singleton unknown function unknown function -1 57161 57598
APC46116.1 KX889068_p47 hypothetical protein singleton unknown function unknown function -1 51856 52041
APC46037.1 KX889068_p34 ribonucleotide reductase protein, small chain family phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 43036 43977
APC46081.1 KX889068_p3 hypothetical protein singleton unknown function unknown function 1 1006 1275
APC46078.1 KX889068_p52 hypothetical protein singleton unknown function unknown function -1 54196 54468
APC46033.1 KX889068_p50 metallopeptidase protein domain phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism -1 52764 53960
APC46022.1 KX889068_p30 DNA primase protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism -1 37135 39300
APC46040.1 KX889068_p56 hypothetical protein phrog_23862 unknown function unknown function 1 55700 56620
APC46055.1 KX889068_p97 hypothetical protein singleton unknown function unknown function -1 74334 74849
APC46070.1 KX889068_p17 endonuclease III protein phrog_2346 unknown function unknown function 1 16340 16678
APC46034.1 KX889068_p18 tape measure protein phrog_2120 tail length tape measure protein tail 1 16678 17793
APC46063.1 KX889068_p71 hypothetical protein singleton unknown function unknown function -1 65570 65986
APC46096.1 KX889068_p91 hypothetical protein singleton unknown function unknown function -1 72687 72926
APC46072.1 KX889068_p105 hypothetical protein phrog_18963 unknown function unknown function -1 77246 77584
APC46106.1 KX889068_p80 hypothetical protein singleton unknown function unknown function -1 69584 69802
APC46048.1 KX889068_p29 N4protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 36117 36842
APC46112.1 KX889068_p60 hypothetical protein phrog_27189 unknown function unknown function -1 57866 58069
APC46024.1 KX889068_p67 hypothetical protein phrog_1735 unknown function unknown function -1 61930 63909
APC46091.1 KX889068_p2 hypothetical protein singleton unknown function unknown function 1 768 1013
APC46051.1 KX889068_p23 hypothetical protein phrog_18869 unknown function unknown function 1 22782 23471
APC46117.1 KX889068_p64 hypothetical protein singleton unknown function unknown function -1 60150 60335
APC46044.1 KX889068_p15 PhoH-like protein phrog_170 PhoH-like phosphate starvation-inducible other -1 13309 14052
APC46124.1 KX889068_p95 hypothetical protein singleton unknown function unknown function -1 73712 73840
APC46075.1 KX889068_p75 hypothetical protein phrog_29903 unknown function unknown function -1 67053 67361
APC46020.1 KX889068_p45 DNA Polymerase I protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 48979 51522
APC46086.1 KX889068_p94 hypothetical protein singleton unknown function unknown function -1 73462 73719
APC46031.1 KX889068_p19 major coat protein phrog_1357 major head protein head and packaging 1 17805 19253
APC46089.1 KX889068_p92 hypothetical protein singleton unknown function unknown function -1 72938 73189
APC46085.1 KX889068_p77 hypothetical protein singleton unknown function unknown function -1 67617 67874
APC46074.1 KX889068_p53 hypothetical protein phrog_21021 unknown function unknown function -1 54465 54776
APC46056.1 KX889068_p55 HNH homing endonuclease protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism -1 55133 55615
APC46119.1 KX889068_p84 hypothetical protein singleton unknown function unknown function -1 70465 70647
APC46059.1 KX889068_p10 hypothetical protein phrog_17691 unknown function unknown function 1 10259 10708
APC46107.1 KX889068_p81 hypothetical protein phrog_20611 unknown function unknown function -1 69789 70007
APC46036.1 KX889068_p32 N4protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism -1 40187 41170
APC46092.1 KX889068_p42 hypothetical protein singleton unknown function unknown function -1 48287 48529
APC46111.1 KX889068_p99 hypothetical protein singleton unknown function unknown function -1 75231 75437
APC46077.1 KX889068_p44 hypothetical protein singleton unknown function unknown function -1 48714 48995
APC46065.1 KX889068_p69 srd postulated decoy protein phrog_3118 HNH endonuclease DNA, RNA and nucleotide metabolism -1 64132 64500
APC46043.1 KX889068_p62 hypothetical protein singleton unknown function unknown function -1 59048 59863
APC46039.1 KX889068_p89 RNA polymerase protein phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism -1 71514 72446
APC46100.1 KX889068_p98 hypothetical protein singleton unknown function unknown function -1 74999 75229
APC46049.1 KX889068_p8 tail protein phrog_2125 virion structural protein head and packaging 1 7240 7947
ASV62328.1 KX889068_p40 thymidilate synthase protein phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 46878 48287
APC46023.1 KX889068_p16 N4protein phrog_1216 portal protein head and packaging 1 14141 16276
APC46042.1 KX889068_p24 hypothetical protein phrog_20377 unknown function unknown function 1 23482 24339