| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX898399 |
Definition |
Pseudomonas phage JG012, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nipunavirus; unclassified Nipunavirus. |
DB of origin |
NUCCORE |
Length |
58359 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
58.44 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB11084.1 | KX898399_p16 | structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 11963 | 12391 |
| ARB11124.1 | KX898399_p56 | hypothetical protein | phrog_20983 | unknown function | unknown function | -1 | 46260 | 46904 |
| ARB11112.1 | KX898399_p44 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 37471 | 37662 |
| ARB11079.1 | KX898399_p11 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 8804 | 9187 |
| ARB11088.1 | KX898399_p20 | structural protein | phrog_1082 | tail assembly protein | tail | 1 | 17865 | 19046 |
| ARB11074.1 | KX898399_p6 | major head protein | phrog_247 | major head protein | head and packaging | 1 | 5562 | 6596 |
| ARB11127.1 | KX898399_p59 | hypothetical protein | phrog_25433 | unknown function | unknown function | 1 | 48075 | 48707 |
| ARB11073.1 | KX898399_p5 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 4597 | 5412 |
| ARB11131.1 | KX898399_p63 | hypothetical protein | phrog_3848 | unknown function | unknown function | 1 | 49826 | 50107 |
| ARB11109.1 | KX898399_p41 | hypothetical protein | phrog_21588 | unknown function | unknown function | -1 | 34061 | 34591 |
| ARB11133.1 | KX898399_p65 | nucleotide triphosphate hydrolase | phrog_10855 | hydrolase | other | 1 | 50372 | 50908 |
| ARB11130.1 | KX898399_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49653 | 49829 |
| ARB11093.1 | KX898399_p25 | structural protein | phrog_1101 | tail protein | tail | 1 | 20794 | 22971 |
| ARB11114.1 | KX898399_p46 | RecA ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 38594 | 39319 |
| ARB11142.1 | KX898399_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56387 | 56626 |
| ARB11110.1 | KX898399_p42 | superfamily II helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 34739 | 36514 |
| ARB11101.1 | KX898399_p33 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 28531 | 28974 |
| ARB11103.1 | KX898399_p35 | queuosine biosynthesis protein QueD | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 29936 | 30358 |
| ARB11071.1 | KX898399_p3 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 1779 | 3335 |
| ARB11076.1 | KX898399_p8 | hypothetical protein | phrog_17843 | unknown function | unknown function | 1 | 7245 | 7952 |
| ARB11126.1 | KX898399_p58 | hypothetical protein | phrog_9154 | unknown function | unknown function | 1 | 47492 | 47695 |
| ARB11136.1 | KX898399_p68 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53371 | 53832 |
| ARB11072.1 | KX898399_p4 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 3339 | 4538 |
| ARB11129.1 | KX898399_p61 | hypothetical protein | phrog_4301 | unknown function | unknown function | 1 | 49228 | 49656 |
| ARB11069.1 | KX898399_p1 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 1 | 447 |
| ARB11137.1 | KX898399_p69 | hypothetical protein | phrog_21857 | unknown function | unknown function | 1 | 53832 | 54062 |
| ARB11118.1 | KX898399_p50 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 41262 | 42002 |
| ARB11081.1 | KX898399_p13 | major tail structural protein | phrog_290 | minor tail protein | tail | 1 | 9599 | 11128 |
| ARB11070.1 | KX898399_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 444 | 1766 |
| ARB11111.1 | KX898399_p43 | exonuclease RecB | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 36511 | 37443 |
| ARB11099.1 | KX898399_p31 | DNA polymerase III beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 26643 | 27596 |
| ARB11104.1 | KX898399_p36 | queuosine biosynthesis protein QueC | phrog_10428 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 30363 | 31763 |
| ARB11077.1 | KX898399_p9 | structural protein | phrog_21641 | virion structural protein | head and packaging | 1 | 7956 | 8288 |
| ARB11123.1 | KX898399_p55 | hypothetical protein | phrog_11967 | unknown function | unknown function | -1 | 45928 | 46170 |
| ARB11091.1 | KX898399_p23 | structural protein | singleton | unknown function | unknown function | 1 | 20373 | 20504 |
| ARB11105.1 | KX898399_p37 | queuosine biosynthesis protein QueE | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 31767 | 32474 |
| ARB11128.1 | KX898399_p60 | hypothetical protein | phrog_17558 | unknown function | unknown function | 1 | 48710 | 49228 |
| ARB11089.1 | KX898399_p21 | structural protein | phrog_37552 | tail protein | tail | 1 | 19048 | 19557 |
| ARB11085.1 | KX898399_p17 | tape measure domain protein | phrog_3336 | tail length tape measure protein | tail | 1 | 12391 | 15321 |
| ARB11082.1 | KX898399_p14 | structural protein | phrog_313 | Tail assembly chaperone | tail | 1 | 11187 | 11606 |
| ARB11117.1 | KX898399_p49 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 40358 | 41260 |
| ARB11140.1 | KX898399_p72 | hypothetical protein | phrog_24261 | unknown function | unknown function | 1 | 56036 | 56197 |
| ARB11138.1 | KX898399_p70 | UvrD superfamily I helicase | phrog_1967 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 54155 | 55603 |
| ARB11134.1 | KX898399_p66 | hypothetical protein | phrog_21505 | unknown function | unknown function | 1 | 50905 | 51327 |
| ARB11116.1 | KX898399_p48 | hypothetical protein | phrog_22007 | unknown function | unknown function | -1 | 40206 | 40361 |
| ARB11141.1 | KX898399_p73 | hypothetical protein | phrog_21599 | unknown function | unknown function | 1 | 56194 | 56448 |
| ARB11078.1 | KX898399_p10 | structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 8288 | 8800 |
| ARB11080.1 | KX898399_p12 | tail terminator protein | phrog_179 | tail terminator | connector | 1 | 9184 | 9594 |
| ARB11083.1 | KX898399_p15 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 11744 | 11962 |
| ARB11087.1 | KX898399_p19 | structural protein | phrog_687 | structural protein | head and packaging | 1 | 16862 | 17863 |
| ARB11143.1 | KX898399_p75 | lytic transglycosylase | phrog_4928 | unknown function | unknown function | 1 | 56623 | 57147 |
| ARB11086.1 | KX898399_p18 | structural protein | phrog_687 | structural protein | head and packaging | 1 | 15332 | 16852 |
| ARB11108.1 | KX898399_p40 | hypothetical protein | phrog_27908 | unknown function | unknown function | -1 | 33847 | 34020 |
| ARB11100.1 | KX898399_p32 | queuosine tRNA ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 27596 | 28534 |
| ARB11098.1 | KX898399_p30 | DNA polymerase B | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 24411 | 26591 |
| ARB11119.1 | KX898399_p51 | RNaseH | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 41999 | 42358 |
| ARB11095.1 | KX898399_p27 | hypothetical protein | phrog_18970 | unknown function | unknown function | -1 | 23340 | 23705 |
| ARB11132.1 | KX898399_p64 | Znf domain-containing protein | phrog_4276 | unknown function | unknown function | 1 | 50100 | 50387 |
| ARB11102.1 | KX898399_p34 | GTP cyclohydrolase | phrog_2197 | GTP cyclohydrolase | other | -1 | 29033 | 29926 |
| ARB11125.1 | KX898399_p57 | hypothetical protein | phrog_26940 | unknown function | unknown function | 1 | 47305 | 47469 |
| ARB11092.1 | KX898399_p24 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 20604 | 20807 |
| ARB11097.1 | KX898399_p29 | hypothetical protein | phrog_12453 | unknown function | unknown function | -1 | 23946 | 24224 |
| ARB11107.1 | KX898399_p39 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 33186 | 33857 |
| ARB11145.1 | KX898399_p77 | hypothetical protein | phrog_5975 | unknown function | unknown function | 1 | 57585 | 58148 |
| ARB11094.1 | KX898399_p26 | hypothetical protein | phrog_5363 | unknown function | unknown function | 1 | 22971 | 23327 |
| ARB11122.1 | KX898399_p54 | primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 43481 | 45931 |
| ARB11113.1 | KX898399_p45 | hypothetical protein | phrog_13350 | unknown function | unknown function | -1 | 37725 | 38588 |
| ARB11144.1 | KX898399_p76 | superfamily III holin | phrog_785 | holin | lysis | 1 | 57242 | 57607 |
| ARB11139.1 | KX898399_p71 | hypothetical protein | phrog_22564 | unknown function | unknown function | 1 | 55693 | 56058 |
| ARB11106.1 | KX898399_p38 | hypothetical protein | phrog_18634 | unknown function | unknown function | -1 | 32565 | 33089 |
| ARB11121.1 | KX898399_p53 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | -1 | 42905 | 43387 |
| ARB11135.1 | KX898399_p67 | adenosylcobalamin-dependent ribonucleoside-triphosphate reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 51709 | 53292 |
| ARB11075.1 | KX898399_p7 | hypothetical protein | phrog_11997 | unknown function | unknown function | 1 | 6662 | 7171 |
| ARB11096.1 | KX898399_p28 | hypothetical protein | phrog_6168 | unknown function | unknown function | -1 | 23677 | 23883 |
| ARB11115.1 | KX898399_p47 | DNA topoisomerase | phrog_6247 | DNA topoisomerase | DNA, RNA and nucleotide metabolism | -1 | 39319 | 40209 |
| ARB11120.1 | KX898399_p52 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 42444 | 42896 |
| ARB11090.1 | KX898399_p22 | structural protein | phrog_778 | tail assembly protein | tail | 1 | 19554 | 20363 |