Genomic map of Pseudomonas phage JG012 (KX898399)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX898399
Definition
Pseudomonas phage JG012, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nipunavirus; unclassified Nipunavirus.
DB of origin
NUCCORE
Length
58359
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
58.44
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARB11084.1 KX898399_p16 structural protein phrog_169 tail completion or Neck1 protein connector 1 11963 12391
ARB11124.1 KX898399_p56 hypothetical protein phrog_20983 unknown function unknown function -1 46260 46904
ARB11112.1 KX898399_p44 hypothetical protein phrog_54 DksA-like zinc-finger protein other -1 37471 37662
ARB11079.1 KX898399_p11 structural protein phrog_161 head closure Hc1 connector 1 8804 9187
ARB11088.1 KX898399_p20 structural protein phrog_1082 tail assembly protein tail 1 17865 19046
ARB11074.1 KX898399_p6 major head protein phrog_247 major head protein head and packaging 1 5562 6596
ARB11127.1 KX898399_p59 hypothetical protein phrog_25433 unknown function unknown function 1 48075 48707
ARB11073.1 KX898399_p5 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 4597 5412
ARB11131.1 KX898399_p63 hypothetical protein phrog_3848 unknown function unknown function 1 49826 50107
ARB11109.1 KX898399_p41 hypothetical protein phrog_21588 unknown function unknown function -1 34061 34591
ARB11133.1 KX898399_p65 nucleotide triphosphate hydrolase phrog_10855 hydrolase other 1 50372 50908
ARB11130.1 KX898399_p62 hypothetical protein singleton unknown function unknown function 1 49653 49829
ARB11093.1 KX898399_p25 structural protein phrog_1101 tail protein tail 1 20794 22971
ARB11114.1 KX898399_p46 RecA ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 38594 39319
ARB11142.1 KX898399_p74 hypothetical protein singleton unknown function unknown function 1 56387 56626
ARB11110.1 KX898399_p42 superfamily II helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 34739 36514
ARB11101.1 KX898399_p33 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism -1 28531 28974
ARB11103.1 KX898399_p35 queuosine biosynthesis protein QueD phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 29936 30358
ARB11071.1 KX898399_p3 portal protein phrog_145 portal protein head and packaging 1 1779 3335
ARB11076.1 KX898399_p8 hypothetical protein phrog_17843 unknown function unknown function 1 7245 7952
ARB11126.1 KX898399_p58 hypothetical protein phrog_9154 unknown function unknown function 1 47492 47695
ARB11136.1 KX898399_p68 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 53371 53832
ARB11072.1 KX898399_p4 head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 3339 4538
ARB11129.1 KX898399_p61 hypothetical protein phrog_4301 unknown function unknown function 1 49228 49656
ARB11069.1 KX898399_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 1 447
ARB11137.1 KX898399_p69 hypothetical protein phrog_21857 unknown function unknown function 1 53832 54062
ARB11118.1 KX898399_p50 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 41262 42002
ARB11081.1 KX898399_p13 major tail structural protein phrog_290 minor tail protein tail 1 9599 11128
ARB11070.1 KX898399_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 444 1766
ARB11111.1 KX898399_p43 exonuclease RecB phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 36511 37443
ARB11099.1 KX898399_p31 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 26643 27596
ARB11104.1 KX898399_p36 queuosine biosynthesis protein QueC phrog_10428 L-glutamine-D-fructose-6-phosphate aminotransferase other -1 30363 31763
ARB11077.1 KX898399_p9 structural protein phrog_21641 virion structural protein head and packaging 1 7956 8288
ARB11123.1 KX898399_p55 hypothetical protein phrog_11967 unknown function unknown function -1 45928 46170
ARB11091.1 KX898399_p23 structural protein singleton unknown function unknown function 1 20373 20504
ARB11105.1 KX898399_p37 queuosine biosynthesis protein QueE phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 31767 32474
ARB11128.1 KX898399_p60 hypothetical protein phrog_17558 unknown function unknown function 1 48710 49228
ARB11089.1 KX898399_p21 structural protein phrog_37552 tail protein tail 1 19048 19557
ARB11085.1 KX898399_p17 tape measure domain protein phrog_3336 tail length tape measure protein tail 1 12391 15321
ARB11082.1 KX898399_p14 structural protein phrog_313 Tail assembly chaperone tail 1 11187 11606
ARB11117.1 KX898399_p49 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 40358 41260
ARB11140.1 KX898399_p72 hypothetical protein phrog_24261 unknown function unknown function 1 56036 56197
ARB11138.1 KX898399_p70 UvrD superfamily I helicase phrog_1967 DNA helicase DNA, RNA and nucleotide metabolism 1 54155 55603
ARB11134.1 KX898399_p66 hypothetical protein phrog_21505 unknown function unknown function 1 50905 51327
ARB11116.1 KX898399_p48 hypothetical protein phrog_22007 unknown function unknown function -1 40206 40361
ARB11141.1 KX898399_p73 hypothetical protein phrog_21599 unknown function unknown function 1 56194 56448
ARB11078.1 KX898399_p10 structural protein phrog_477 head-tail adaptor Ad1 connector 1 8288 8800
ARB11080.1 KX898399_p12 tail terminator protein phrog_179 tail terminator connector 1 9184 9594
ARB11083.1 KX898399_p15 hypothetical protein phrog_3817 tail chaperonin tail 1 11744 11962
ARB11087.1 KX898399_p19 structural protein phrog_687 structural protein head and packaging 1 16862 17863
ARB11143.1 KX898399_p75 lytic transglycosylase phrog_4928 unknown function unknown function 1 56623 57147
ARB11086.1 KX898399_p18 structural protein phrog_687 structural protein head and packaging 1 15332 16852
ARB11108.1 KX898399_p40 hypothetical protein phrog_27908 unknown function unknown function -1 33847 34020
ARB11100.1 KX898399_p32 queuosine tRNA ribosyltransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover -1 27596 28534
ARB11098.1 KX898399_p30 DNA polymerase B phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 24411 26591
ARB11119.1 KX898399_p51 RNaseH phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 41999 42358
ARB11095.1 KX898399_p27 hypothetical protein phrog_18970 unknown function unknown function -1 23340 23705
ARB11132.1 KX898399_p64 Znf domain-containing protein phrog_4276 unknown function unknown function 1 50100 50387
ARB11102.1 KX898399_p34 GTP cyclohydrolase phrog_2197 GTP cyclohydrolase other -1 29033 29926
ARB11125.1 KX898399_p57 hypothetical protein phrog_26940 unknown function unknown function 1 47305 47469
ARB11092.1 KX898399_p24 hypothetical protein phrog_1196 tail assembly chaperone tail 1 20604 20807
ARB11097.1 KX898399_p29 hypothetical protein phrog_12453 unknown function unknown function -1 23946 24224
ARB11107.1 KX898399_p39 hypothetical protein phrog_7864 unknown function unknown function -1 33186 33857
ARB11145.1 KX898399_p77 hypothetical protein phrog_5975 unknown function unknown function 1 57585 58148
ARB11094.1 KX898399_p26 hypothetical protein phrog_5363 unknown function unknown function 1 22971 23327
ARB11122.1 KX898399_p54 primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 43481 45931
ARB11113.1 KX898399_p45 hypothetical protein phrog_13350 unknown function unknown function -1 37725 38588
ARB11144.1 KX898399_p76 superfamily III holin phrog_785 holin lysis 1 57242 57607
ARB11139.1 KX898399_p71 hypothetical protein phrog_22564 unknown function unknown function 1 55693 56058
ARB11106.1 KX898399_p38 hypothetical protein phrog_18634 unknown function unknown function -1 32565 33089
ARB11121.1 KX898399_p53 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 42905 43387
ARB11135.1 KX898399_p67 adenosylcobalamin-dependent ribonucleoside-triphosphate reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 51709 53292
ARB11075.1 KX898399_p7 hypothetical protein phrog_11997 unknown function unknown function 1 6662 7171
ARB11096.1 KX898399_p28 hypothetical protein phrog_6168 unknown function unknown function -1 23677 23883
ARB11115.1 KX898399_p47 DNA topoisomerase phrog_6247 DNA topoisomerase DNA, RNA and nucleotide metabolism -1 39319 40209
ARB11120.1 KX898399_p52 hypothetical protein phrog_2480 unknown function unknown function -1 42444 42896
ARB11090.1 KX898399_p22 structural protein phrog_778 tail assembly protein tail 1 19554 20363