| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX898400 |
Definition |
Pseudomonas phage JG054, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nipunavirus; unclassified Nipunavirus. |
DB of origin |
NUCCORE |
Length |
57839 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
57.64 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB11171.1 | KX898400_p26 | structural protein | phrog_5363 | unknown function | unknown function | 1 | 22978 | 23334 |
| ARB11178.1 | KX898400_p33 | GTP cyclohydrolase | phrog_2197 | GTP cyclohydrolase | other | -1 | 28600 | 29493 |
| ARB11181.1 | KX898400_p36 | queuosine biosynthesis protein QueE | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 31334 | 32041 |
| ARB11175.1 | KX898400_p30 | DNA polymerase B | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 24419 | 26599 |
| ARB11205.1 | KX898400_p60 | Znf domain-containing protein | phrog_4276 | unknown function | unknown function | 1 | 49254 | 49541 |
| ARB11198.1 | KX898400_p53 | hypothetical protein | phrog_11967 | unknown function | unknown function | -1 | 45534 | 45797 |
| ARB11210.1 | KX898400_p65 | hypothetical protein | phrog_21857 | unknown function | unknown function | 1 | 52977 | 53207 |
| ARB11189.1 | KX898400_p44 | RecA ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 38200 | 38925 |
| ARB11185.1 | KX898400_p40 | hypothetical protein | phrog_21588 | unknown function | unknown function | -1 | 33727 | 34236 |
| ARB11209.1 | KX898400_p64 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52516 | 52977 |
| ARB11167.1 | KX898400_p22 | structural protein | phrog_778 | tail assembly protein | tail | 1 | 19562 | 20371 |
| ARB11157.1 | KX898400_p12 | tail terminator protein | phrog_179 | tail terminator | connector | 1 | 9191 | 9601 |
| ARB11187.1 | KX898400_p42 | exonuclease RecB | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 36158 | 37090 |
| ARB11199.1 | KX898400_p54 | hypothetical protein | phrog_20983 | unknown function | unknown function | -1 | 45885 | 46538 |
| ARB11186.1 | KX898400_p41 | superfamily II DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 34383 | 36161 |
| ARB11161.1 | KX898400_p16 | structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 11966 | 12394 |
| ARB11170.1 | KX898400_p25 | structural protein | phrog_1101 | tail protein | tail | 1 | 20801 | 22978 |
| ARB11191.1 | KX898400_p46 | hypothetical protein | phrog_22007 | unknown function | unknown function | -1 | 39812 | 39967 |
| ARB11169.1 | KX898400_p24 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 20611 | 20814 |
| ARB11148.1 | KX898400_p3 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 1779 | 3314 |
| ARB11149.1 | KX898400_p4 | head protein | phrog_241 | head morphogenesis | head and packaging | 1 | 3318 | 4517 |
| ARB11202.1 | KX898400_p57 | hypothetical protein | phrog_17558 | unknown function | unknown function | 1 | 47881 | 48396 |
| ARB11152.1 | KX898400_p7 | hypothetical protein | phrog_11997 | unknown function | unknown function | 1 | 6645 | 7157 |
| ARB11160.1 | KX898400_p15 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 11742 | 11966 |
| ARB11177.1 | KX898400_p32 | queuosine tRNA ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 27603 | 28541 |
| ARB11207.1 | KX898400_p62 | hypothetical protein | phrog_21505 | unknown function | unknown function | 1 | 50056 | 50478 |
| ARB11146.1 | KX898400_p1 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 1 | 447 |
| ARB11180.1 | KX898400_p35 | queuosine biosynthesis protein QueC | phrog_10428 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 29930 | 31330 |
| ARB11172.1 | KX898400_p27 | hypothetical protein | phrog_18970 | unknown function | unknown function | -1 | 23288 | 23713 |
| ARB11162.1 | KX898400_p17 | tail tape measure domain protein | phrog_3336 | tail length tape measure protein | tail | 1 | 12394 | 15324 |
| ARB11159.1 | KX898400_p14 | structural protein | phrog_313 | Tail assembly chaperone | tail | 1 | 11194 | 11613 |
| ARB11216.1 | KX898400_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55988 | 56098 |
| ARB11194.1 | KX898400_p49 | RNaseH | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 41605 | 41964 |
| ARB11190.1 | KX898400_p45 | DNA topoisomerase | phrog_6247 | DNA topoisomerase | DNA, RNA and nucleotide metabolism | -1 | 38925 | 39815 |
| ARB11155.1 | KX898400_p10 | structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 8294 | 8806 |
| ARB11184.1 | KX898400_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33503 | 33679 |
| ARB11182.1 | KX898400_p37 | hypothetical protein | phrog_18634 | unknown function | unknown function | -1 | 32137 | 32664 |
| ARB11163.1 | KX898400_p18 | structural protein | phrog_687 | structural protein | head and packaging | 1 | 15336 | 16865 |
| ARB11164.1 | KX898400_p19 | structural protein | phrog_687 | structural protein | head and packaging | 1 | 16875 | 17876 |
| ARB11200.1 | KX898400_p55 | hypothetical protein | phrog_3633 | unknown function | unknown function | 1 | 46938 | 47240 |
| ARB11204.1 | KX898400_p59 | hypothetical protein | phrog_3848 | unknown function | unknown function | 1 | 48980 | 49261 |
| ARB11212.1 | KX898400_p67 | hypothetical protein | phrog_22564 | unknown function | unknown function | 1 | 54906 | 55271 |
| ARB11219.1 | KX898400_p74 | hypothetical protein | phrog_5975 | unknown function | unknown function | 1 | 57065 | 57628 |
| ARB11192.1 | KX898400_p47 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 39964 | 40866 |
| ARB11147.1 | KX898400_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 444 | 1766 |
| ARB11197.1 | KX898400_p52 | primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 43087 | 45537 |
| ARB11151.1 | KX898400_p6 | major head protein | phrog_247 | major head protein | head and packaging | 1 | 5544 | 6578 |
| ARB11201.1 | KX898400_p56 | hypothetical protein | phrog_9154 | unknown function | unknown function | 1 | 47296 | 47499 |
| ARB11158.1 | KX898400_p13 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 9606 | 11135 |
| ARB11218.1 | KX898400_p73 | superfamily III holin | phrog_785 | holin | lysis | 1 | 56803 | 57087 |
| ARB11211.1 | KX898400_p66 | UvrD superfamily I DNA helicase | phrog_1967 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 53291 | 54814 |
| ARB11188.1 | KX898400_p43 | hypothetical protein | phrog_13350 | unknown function | unknown function | -1 | 37380 | 38195 |
| ARB11196.1 | KX898400_p51 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | -1 | 42514 | 42993 |
| ARB11193.1 | KX898400_p48 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 40868 | 41608 |
| ARB11206.1 | KX898400_p61 | nucleotide triphosphate hydrolase | phrog_10855 | hydrolase | other | 1 | 49526 | 50059 |
| ARB11183.1 | KX898400_p38 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 32763 | 33503 |
| ARB11217.1 | KX898400_p72 | lytic transglycosylase | phrog_4928 | unknown function | unknown function | 1 | 56111 | 56635 |
| ARB11153.1 | KX898400_p8 | hypothetical protein | phrog_17843 | unknown function | unknown function | 1 | 7230 | 7955 |
| ARB11165.1 | KX898400_p20 | structural protein | phrog_1082 | tail assembly protein | tail | 1 | 17878 | 18999 |
| ARB11176.1 | KX898400_p31 | DNA polymerase III beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 26650 | 27603 |
| ARB11203.1 | KX898400_p58 | hypothetical protein | phrog_5200 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48396 | 48932 |
| ARB11166.1 | KX898400_p21 | structural protein | phrog_37552 | tail protein | tail | 1 | 18996 | 19565 |
| ARB11208.1 | KX898400_p63 | adenosylcobalamin-dependent ribonucleoside-triphosphate reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 50543 | 52438 |
| ARB11168.1 | KX898400_p23 | structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 20381 | 20614 |
| ARB11215.1 | KX898400_p70 | hypothetical protein | phrog_21599 | unknown function | unknown function | 1 | 55667 | 55921 |
| ARB11213.1 | KX898400_p68 | hypothetical protein | phrog_24261 | unknown function | unknown function | 1 | 55249 | 55410 |
| ARB11156.1 | KX898400_p11 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 8811 | 9194 |
| ARB11150.1 | KX898400_p5 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 4575 | 5393 |
| ARB11179.1 | KX898400_p34 | queuosine biosynthesis protein QueD | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 29503 | 29925 |
| ARB11174.1 | KX898400_p29 | hypothetical protein | phrog_12453 | unknown function | unknown function | -1 | 23954 | 24232 |
| ARB11195.1 | KX898400_p50 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 42050 | 42505 |
| ARB11214.1 | KX898400_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55407 | 55670 |
| ARB11173.1 | KX898400_p28 | hypothetical protein | phrog_6168 | unknown function | unknown function | -1 | 23685 | 23891 |
| ARB11154.1 | KX898400_p9 | structural protein | phrog_21641 | virion structural protein | head and packaging | 1 | 7959 | 8294 |