Genomic map of Pseudomonas phage JG054 (KX898400)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX898400
Definition
Pseudomonas phage JG054, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nipunavirus; unclassified Nipunavirus.
DB of origin
NUCCORE
Length
57839
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
57.64
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARB11171.1 KX898400_p26 structural protein phrog_5363 unknown function unknown function 1 22978 23334
ARB11178.1 KX898400_p33 GTP cyclohydrolase phrog_2197 GTP cyclohydrolase other -1 28600 29493
ARB11181.1 KX898400_p36 queuosine biosynthesis protein QueE phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover -1 31334 32041
ARB11175.1 KX898400_p30 DNA polymerase B phrog_1252 DNA polymerase DNA, RNA and nucleotide metabolism -1 24419 26599
ARB11205.1 KX898400_p60 Znf domain-containing protein phrog_4276 unknown function unknown function 1 49254 49541
ARB11198.1 KX898400_p53 hypothetical protein phrog_11967 unknown function unknown function -1 45534 45797
ARB11210.1 KX898400_p65 hypothetical protein phrog_21857 unknown function unknown function 1 52977 53207
ARB11189.1 KX898400_p44 RecA ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 38200 38925
ARB11185.1 KX898400_p40 hypothetical protein phrog_21588 unknown function unknown function -1 33727 34236
ARB11209.1 KX898400_p64 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 52516 52977
ARB11167.1 KX898400_p22 structural protein phrog_778 tail assembly protein tail 1 19562 20371
ARB11157.1 KX898400_p12 tail terminator protein phrog_179 tail terminator connector 1 9191 9601
ARB11187.1 KX898400_p42 exonuclease RecB phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 36158 37090
ARB11199.1 KX898400_p54 hypothetical protein phrog_20983 unknown function unknown function -1 45885 46538
ARB11186.1 KX898400_p41 superfamily II DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 34383 36161
ARB11161.1 KX898400_p16 structural protein phrog_169 tail completion or Neck1 protein connector 1 11966 12394
ARB11170.1 KX898400_p25 structural protein phrog_1101 tail protein tail 1 20801 22978
ARB11191.1 KX898400_p46 hypothetical protein phrog_22007 unknown function unknown function -1 39812 39967
ARB11169.1 KX898400_p24 hypothetical protein phrog_1196 tail assembly chaperone tail 1 20611 20814
ARB11148.1 KX898400_p3 portal protein phrog_145 portal protein head and packaging 1 1779 3314
ARB11149.1 KX898400_p4 head protein phrog_241 head morphogenesis head and packaging 1 3318 4517
ARB11202.1 KX898400_p57 hypothetical protein phrog_17558 unknown function unknown function 1 47881 48396
ARB11152.1 KX898400_p7 hypothetical protein phrog_11997 unknown function unknown function 1 6645 7157
ARB11160.1 KX898400_p15 hypothetical protein phrog_3817 tail chaperonin tail 1 11742 11966
ARB11177.1 KX898400_p32 queuosine tRNA ribosyltransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover -1 27603 28541
ARB11207.1 KX898400_p62 hypothetical protein phrog_21505 unknown function unknown function 1 50056 50478
ARB11146.1 KX898400_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 1 447
ARB11180.1 KX898400_p35 queuosine biosynthesis protein QueC phrog_10428 L-glutamine-D-fructose-6-phosphate aminotransferase other -1 29930 31330
ARB11172.1 KX898400_p27 hypothetical protein phrog_18970 unknown function unknown function -1 23288 23713
ARB11162.1 KX898400_p17 tail tape measure domain protein phrog_3336 tail length tape measure protein tail 1 12394 15324
ARB11159.1 KX898400_p14 structural protein phrog_313 Tail assembly chaperone tail 1 11194 11613
ARB11216.1 KX898400_p71 hypothetical protein singleton unknown function unknown function 1 55988 56098
ARB11194.1 KX898400_p49 RNaseH phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 41605 41964
ARB11190.1 KX898400_p45 DNA topoisomerase phrog_6247 DNA topoisomerase DNA, RNA and nucleotide metabolism -1 38925 39815
ARB11155.1 KX898400_p10 structural protein phrog_477 head-tail adaptor Ad1 connector 1 8294 8806
ARB11184.1 KX898400_p39 hypothetical protein singleton unknown function unknown function -1 33503 33679
ARB11182.1 KX898400_p37 hypothetical protein phrog_18634 unknown function unknown function -1 32137 32664
ARB11163.1 KX898400_p18 structural protein phrog_687 structural protein head and packaging 1 15336 16865
ARB11164.1 KX898400_p19 structural protein phrog_687 structural protein head and packaging 1 16875 17876
ARB11200.1 KX898400_p55 hypothetical protein phrog_3633 unknown function unknown function 1 46938 47240
ARB11204.1 KX898400_p59 hypothetical protein phrog_3848 unknown function unknown function 1 48980 49261
ARB11212.1 KX898400_p67 hypothetical protein phrog_22564 unknown function unknown function 1 54906 55271
ARB11219.1 KX898400_p74 hypothetical protein phrog_5975 unknown function unknown function 1 57065 57628
ARB11192.1 KX898400_p47 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 39964 40866
ARB11147.1 KX898400_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 444 1766
ARB11197.1 KX898400_p52 primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 43087 45537
ARB11151.1 KX898400_p6 major head protein phrog_247 major head protein head and packaging 1 5544 6578
ARB11201.1 KX898400_p56 hypothetical protein phrog_9154 unknown function unknown function 1 47296 47499
ARB11158.1 KX898400_p13 major tail protein phrog_290 minor tail protein tail 1 9606 11135
ARB11218.1 KX898400_p73 superfamily III holin phrog_785 holin lysis 1 56803 57087
ARB11211.1 KX898400_p66 UvrD superfamily I DNA helicase phrog_1967 DNA helicase DNA, RNA and nucleotide metabolism 1 53291 54814
ARB11188.1 KX898400_p43 hypothetical protein phrog_13350 unknown function unknown function -1 37380 38195
ARB11196.1 KX898400_p51 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 42514 42993
ARB11193.1 KX898400_p48 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 40868 41608
ARB11206.1 KX898400_p61 nucleotide triphosphate hydrolase phrog_10855 hydrolase other 1 49526 50059
ARB11183.1 KX898400_p38 hypothetical protein phrog_7864 unknown function unknown function -1 32763 33503
ARB11217.1 KX898400_p72 lytic transglycosylase phrog_4928 unknown function unknown function 1 56111 56635
ARB11153.1 KX898400_p8 hypothetical protein phrog_17843 unknown function unknown function 1 7230 7955
ARB11165.1 KX898400_p20 structural protein phrog_1082 tail assembly protein tail 1 17878 18999
ARB11176.1 KX898400_p31 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 26650 27603
ARB11203.1 KX898400_p58 hypothetical protein phrog_5200 HNH endonuclease DNA, RNA and nucleotide metabolism 1 48396 48932
ARB11166.1 KX898400_p21 structural protein phrog_37552 tail protein tail 1 18996 19565
ARB11208.1 KX898400_p63 adenosylcobalamin-dependent ribonucleoside-triphosphate reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 50543 52438
ARB11168.1 KX898400_p23 structural protein phrog_1180 tail assembly chaperone tail 1 20381 20614
ARB11215.1 KX898400_p70 hypothetical protein phrog_21599 unknown function unknown function 1 55667 55921
ARB11213.1 KX898400_p68 hypothetical protein phrog_24261 unknown function unknown function 1 55249 55410
ARB11156.1 KX898400_p11 structural protein phrog_161 head closure Hc1 connector 1 8811 9194
ARB11150.1 KX898400_p5 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 4575 5393
ARB11179.1 KX898400_p34 queuosine biosynthesis protein QueD phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover -1 29503 29925
ARB11174.1 KX898400_p29 hypothetical protein phrog_12453 unknown function unknown function -1 23954 24232
ARB11195.1 KX898400_p50 hypothetical protein phrog_2480 unknown function unknown function -1 42050 42505
ARB11214.1 KX898400_p69 hypothetical protein singleton unknown function unknown function 1 55407 55670
ARB11173.1 KX898400_p28 hypothetical protein phrog_6168 unknown function unknown function -1 23685 23891
ARB11154.1 KX898400_p9 structural protein phrog_21641 virion structural protein head and packaging 1 7959 8294