| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX905163 |
Definition |
Clostridioides phage phiSemix9P1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus. |
DB of origin |
NUCCORE |
Length |
56606 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
26.88 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB07090.1 | KX905163_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35829 | 36023 |
| ARB07044.1 | KX905163_p1 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 1 | 1740 |
| ARB07073.1 | KX905163_p30 | XkdX-like protein | phrog_134 | unknown function | unknown function | 1 | 21346 | 21483 |
| ARB07103.1 | KX905163_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43953 | 44240 |
| ARB07099.1 | KX905163_p56 | hypothetical protein | phrog_1564 | unknown function | unknown function | 1 | 41940 | 42146 |
| ARB07056.1 | KX905163_p13 | XkdN-like protein | phrog_389 | tail protein XkdN-like | tail | 1 | 8740 | 9156 |
| ARB07051.1 | KX905163_p8 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 6051 | 6398 |
| ARB07110.1 | KX905163_p67 | response regulator | phrog_8810 | unknown function | unknown function | -1 | 50324 | 51079 |
| ARB07104.1 | KX905163_p61 | hypothetical protein | phrog_2065 | unknown function | unknown function | 1 | 44244 | 44408 |
| ARB07062.1 | KX905163_p19 | XkdS-like protein | phrog_120 | baseplate wedge subunit | tail | 1 | 15481 | 15912 |
| ARB07096.1 | KX905163_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41087 | 41221 |
| ARB07071.1 | KX905163_p28 | hypothetical protein | phrog_4184 | unknown function | unknown function | 1 | 19977 | 21020 |
| ARB07058.1 | KX905163_p15 | tail tape measure protein | phrog_991 | tail length tape measure protein | tail | 1 | 9336 | 12725 |
| ARB07054.1 | KX905163_p11 | XkdK-like tail sheath protein | phrog_1480 | tail sheath | tail | 1 | 7213 | 8268 |
| ARB07048.1 | KX905163_p5 | capsid protein | phrog_422 | major head protein | head and packaging | 1 | 4459 | 5382 |
| ARB07072.1 | KX905163_p29 | hypothetical protein | phrog_3834 | unknown function | unknown function | 1 | 21021 | 21344 |
| ARB07113.1 | KX905163_p70 | prophage antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 52979 | 53656 |
| ARB07098.1 | KX905163_p55 | hypothetical protein | phrog_6272 | unknown function | unknown function | 1 | 41763 | 41936 |
| ARB07108.1 | KX905163_p65 | ADP-ribosyltransferase subunit | singleton | unknown function | unknown function | -1 | 45974 | 48595 |
| ARB07045.1 | KX905163_p2 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1763 | 3040 |
| ARB07116.1 | KX905163_p73 | hypothetical protein | phrog_3218 | terminase small subunit | head and packaging | 1 | 55045 | 55521 |
| ARB07066.1 | KX905163_p23 | tail fiber protein | phrog_1162 | tail fiber protein | tail | 1 | 17577 | 18662 |
| ARB07091.1 | KX905163_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36272 | 36979 |
| ARB07084.1 | KX905163_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31184 | 31525 |
| ARB07077.1 | KX905163_p34 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 25776 | 26576 |
| ARB07070.1 | KX905163_p27 | hypothetical protein | phrog_7154 | unknown function | unknown function | 1 | 19751 | 19966 |
| ARB07112.1 | KX905163_p69 | hypothetical protein | phrog_12125 | unknown function | unknown function | 1 | 52538 | 52726 |
| ARB07060.1 | KX905163_p17 | cell wall XkdQ-like hydrolase | phrog_400 | tail protein | tail | 1 | 13560 | 15140 |
| ARB07109.1 | KX905163_p66 | ADP-ribosyltransferase subunit | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | -1 | 48658 | 50043 |
| ARB07064.1 | KX905163_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16959 | 17102 |
| ARB07075.1 | KX905163_p32 | hypothetical protein | phrog_2674 | unknown function | unknown function | 1 | 23595 | 25388 |
| ARB07107.1 | KX905163_p64 | sigma factor | phrog_36 | transcriptional regulator | transcription regulation | 1 | 45213 | 45653 |
| ARB07093.1 | KX905163_p50 | y4mF family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 38537 | 38743 |
| ARB07068.1 | KX905163_p25 | hypothetical protein | phrog_4196 | unknown function | unknown function | 1 | 19324 | 19536 |
| ARB07086.1 | KX905163_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32351 | 32764 |
| ARB07057.1 | KX905163_p14 | hypothetical protein | phrog_2722 | unknown function | unknown function | 1 | 9183 | 9332 |
| ARB07079.1 | KX905163_p36 | ParA-like protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 27056 | 27862 |
| ARB07050.1 | KX905163_p7 | head-tail connector protein | phrog_132 | head-tail adaptor | connector | 1 | 5659 | 6039 |
| ARB07100.1 | KX905163_p57 | regulatory protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 42176 | 43048 |
| ARB07081.1 | KX905163_p38 | hypothetical protein | phrog_12603 | unknown function | unknown function | -1 | 29125 | 29829 |
| ARB07076.1 | KX905163_p33 | holin | phrog_4884 | holin | lysis | 1 | 25510 | 25776 |
| ARB07105.1 | KX905163_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44425 | 44637 |
| ARB07094.1 | KX905163_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38748 | 39059 |
| ARB07102.1 | KX905163_p59 | hypothetical protein | phrog_6593 | unknown function | unknown function | 1 | 43713 | 43928 |
| ARB07111.1 | KX905163_p68 | regulatory protein | phrog_13548 | unknown function | unknown function | 1 | 51376 | 52512 |
| ARB07117.1 | KX905163_p74 | DNA-invertase | phrog_125 | DNA invertase | DNA, RNA and nucleotide metabolism | 1 | 55745 | 56302 |
| ARB07097.1 | KX905163_p54 | y4mF family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 41231 | 41605 |
| ARB07074.1 | KX905163_p31 | glycine rich protein | phrog_1589 | unknown function | unknown function | 1 | 21612 | 23267 |
| ARB07047.1 | KX905163_p4 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 3832 | 4434 |
| ARB07080.1 | KX905163_p37 | hypothetical protein | phrog_12860 | unknown function | unknown function | -1 | 28229 | 28672 |
| ARB07095.1 | KX905163_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39296 | 39691 |
| ARB07067.1 | KX905163_p24 | hypothetical protein | phrog_3361 | unknown function | unknown function | 1 | 18676 | 19314 |
| ARB07089.1 | KX905163_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35517 | 35648 |
| ARB07061.1 | KX905163_p18 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 15155 | 15481 |
| ARB07065.1 | KX905163_p22 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 17151 | 17576 |
| ARB07063.1 | KX905163_p20 | XkdT protein | phrog_6 | baseplate wedge subunit | tail | 1 | 15884 | 16957 |
| ARB07082.1 | KX905163_p39 | RNA polymerase sigma factor | phrog_1740 | RNA polymerase sigma factor | transcription regulation | -1 | 29822 | 30364 |
| ARB07101.1 | KX905163_p58 | hypothetical protein | phrog_6412 | unknown function | unknown function | 1 | 43412 | 43726 |
| ARB07115.1 | KX905163_p72 | tyrosine recombinase | phrog_216 | integrase | integration and excision | 1 | 54217 | 54861 |
| ARB07052.1 | KX905163_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6398 | 6754 |
| ARB07085.1 | KX905163_p42 | hypothetical protein | phrog_17041 | unknown function | unknown function | -1 | 31775 | 32158 |
| ARB07055.1 | KX905163_p12 | XkdM-like protein | phrog_365 | tail protein | tail | 1 | 8296 | 8724 |
| ARB07106.1 | KX905163_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44813 | 45091 |
| ARB07078.1 | KX905163_p35 | hypothetical protein | phrog_27746 | unknown function | unknown function | -1 | 26691 | 27056 |
| ARB07046.1 | KX905163_p3 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 3018 | 3773 |
| ARB07069.1 | KX905163_p26 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 19536 | 19718 |
| ARB07053.1 | KX905163_p10 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 6763 | 7212 |
| ARB07059.1 | KX905163_p16 | LysM domain/BON superfamily protein | phrog_380 | endolysin | lysis | 1 | 12736 | 13371 |
| ARB07114.1 | KX905163_p71 | hypothetical protein | phrog_3548 | unknown function | unknown function | 1 | 53671 | 54213 |
| ARB07092.1 | KX905163_p49 | hypothetical protein | phrog_14275 | unknown function | unknown function | 1 | 37638 | 38156 |
| ARB07049.1 | KX905163_p6 | hypothetical protein | phrog_2724 | unknown function | unknown function | 1 | 5394 | 5675 |
| ARB07083.1 | KX905163_p40 | nitroreductase | phrog_18935 | nitroreductase | other | 1 | 30656 | 31168 |
| ARB07088.1 | KX905163_p45 | RepB family protein | phrog_2172 | unknown function | unknown function | -1 | 33330 | 34544 |
| ARB07087.1 | KX905163_p44 | hypothetical protein | phrog_738 | unknown function | unknown function | -1 | 32977 | 33126 |