Genomic map of Clostridioides phage phiSemix9P1 (KX905163)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX905163
Definition
Clostridioides phage phiSemix9P1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
NUCCORE
Length
56606
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
26.88
Number of singletons
13
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARB07090.1 KX905163_p47 hypothetical protein singleton unknown function unknown function -1 35829 36023
ARB07044.1 KX905163_p1 terminase large subunit phrog_38 terminase large subunit head and packaging 1 1 1740
ARB07073.1 KX905163_p30 XkdX-like protein phrog_134 unknown function unknown function 1 21346 21483
ARB07103.1 KX905163_p60 hypothetical protein singleton unknown function unknown function 1 43953 44240
ARB07099.1 KX905163_p56 hypothetical protein phrog_1564 unknown function unknown function 1 41940 42146
ARB07056.1 KX905163_p13 XkdN-like protein phrog_389 tail protein XkdN-like tail 1 8740 9156
ARB07051.1 KX905163_p8 hypothetical protein phrog_615 head-tail adaptor connector 1 6051 6398
ARB07110.1 KX905163_p67 response regulator phrog_8810 unknown function unknown function -1 50324 51079
ARB07104.1 KX905163_p61 hypothetical protein phrog_2065 unknown function unknown function 1 44244 44408
ARB07062.1 KX905163_p19 XkdS-like protein phrog_120 baseplate wedge subunit tail 1 15481 15912
ARB07096.1 KX905163_p53 hypothetical protein singleton unknown function unknown function 1 41087 41221
ARB07071.1 KX905163_p28 hypothetical protein phrog_4184 unknown function unknown function 1 19977 21020
ARB07058.1 KX905163_p15 tail tape measure protein phrog_991 tail length tape measure protein tail 1 9336 12725
ARB07054.1 KX905163_p11 XkdK-like tail sheath protein phrog_1480 tail sheath tail 1 7213 8268
ARB07048.1 KX905163_p5 capsid protein phrog_422 major head protein head and packaging 1 4459 5382
ARB07072.1 KX905163_p29 hypothetical protein phrog_3834 unknown function unknown function 1 21021 21344
ARB07113.1 KX905163_p70 prophage antirepressor phrog_463 anti-repressor transcription regulation 1 52979 53656
ARB07098.1 KX905163_p55 hypothetical protein phrog_6272 unknown function unknown function 1 41763 41936
ARB07108.1 KX905163_p65 ADP-ribosyltransferase subunit singleton unknown function unknown function -1 45974 48595
ARB07045.1 KX905163_p2 portal protein phrog_64 portal protein head and packaging 1 1763 3040
ARB07116.1 KX905163_p73 hypothetical protein phrog_3218 terminase small subunit head and packaging 1 55045 55521
ARB07066.1 KX905163_p23 tail fiber protein phrog_1162 tail fiber protein tail 1 17577 18662
ARB07091.1 KX905163_p48 hypothetical protein singleton unknown function unknown function -1 36272 36979
ARB07084.1 KX905163_p41 hypothetical protein singleton unknown function unknown function 1 31184 31525
ARB07077.1 KX905163_p34 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 25776 26576
ARB07070.1 KX905163_p27 hypothetical protein phrog_7154 unknown function unknown function 1 19751 19966
ARB07112.1 KX905163_p69 hypothetical protein phrog_12125 unknown function unknown function 1 52538 52726
ARB07060.1 KX905163_p17 cell wall XkdQ-like hydrolase phrog_400 tail protein tail 1 13560 15140
ARB07109.1 KX905163_p66 ADP-ribosyltransferase subunit phrog_3895 ADP-ribosyltransferase exoenzyme toxin moron, auxiliary metabolic gene and host takeover -1 48658 50043
ARB07064.1 KX905163_p21 hypothetical protein singleton unknown function unknown function 1 16959 17102
ARB07075.1 KX905163_p32 hypothetical protein phrog_2674 unknown function unknown function 1 23595 25388
ARB07107.1 KX905163_p64 sigma factor phrog_36 transcriptional regulator transcription regulation 1 45213 45653
ARB07093.1 KX905163_p50 y4mF family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 38537 38743
ARB07068.1 KX905163_p25 hypothetical protein phrog_4196 unknown function unknown function 1 19324 19536
ARB07086.1 KX905163_p43 hypothetical protein singleton unknown function unknown function 1 32351 32764
ARB07057.1 KX905163_p14 hypothetical protein phrog_2722 unknown function unknown function 1 9183 9332
ARB07079.1 KX905163_p36 ParA-like protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 27056 27862
ARB07050.1 KX905163_p7 head-tail connector protein phrog_132 head-tail adaptor connector 1 5659 6039
ARB07100.1 KX905163_p57 regulatory protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 42176 43048
ARB07081.1 KX905163_p38 hypothetical protein phrog_12603 unknown function unknown function -1 29125 29829
ARB07076.1 KX905163_p33 holin phrog_4884 holin lysis 1 25510 25776
ARB07105.1 KX905163_p62 hypothetical protein singleton unknown function unknown function 1 44425 44637
ARB07094.1 KX905163_p51 hypothetical protein singleton unknown function unknown function -1 38748 39059
ARB07102.1 KX905163_p59 hypothetical protein phrog_6593 unknown function unknown function 1 43713 43928
ARB07111.1 KX905163_p68 regulatory protein phrog_13548 unknown function unknown function 1 51376 52512
ARB07117.1 KX905163_p74 DNA-invertase phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 1 55745 56302
ARB07097.1 KX905163_p54 y4mF family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 41231 41605
ARB07074.1 KX905163_p31 glycine rich protein phrog_1589 unknown function unknown function 1 21612 23267
ARB07047.1 KX905163_p4 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 3832 4434
ARB07080.1 KX905163_p37 hypothetical protein phrog_12860 unknown function unknown function -1 28229 28672
ARB07095.1 KX905163_p52 hypothetical protein singleton unknown function unknown function 1 39296 39691
ARB07067.1 KX905163_p24 hypothetical protein phrog_3361 unknown function unknown function 1 18676 19314
ARB07089.1 KX905163_p46 hypothetical protein singleton unknown function unknown function 1 35517 35648
ARB07061.1 KX905163_p18 hypothetical protein phrog_579 unknown function unknown function 1 15155 15481
ARB07065.1 KX905163_p22 hypothetical protein phrog_521 tail protein tail 1 17151 17576
ARB07063.1 KX905163_p20 XkdT protein phrog_6 baseplate wedge subunit tail 1 15884 16957
ARB07082.1 KX905163_p39 RNA polymerase sigma factor phrog_1740 RNA polymerase sigma factor transcription regulation -1 29822 30364
ARB07101.1 KX905163_p58 hypothetical protein phrog_6412 unknown function unknown function 1 43412 43726
ARB07115.1 KX905163_p72 tyrosine recombinase phrog_216 integrase integration and excision 1 54217 54861
ARB07052.1 KX905163_p9 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 6398 6754
ARB07085.1 KX905163_p42 hypothetical protein phrog_17041 unknown function unknown function -1 31775 32158
ARB07055.1 KX905163_p12 XkdM-like protein phrog_365 tail protein tail 1 8296 8724
ARB07106.1 KX905163_p63 hypothetical protein singleton unknown function unknown function 1 44813 45091
ARB07078.1 KX905163_p35 hypothetical protein phrog_27746 unknown function unknown function -1 26691 27056
ARB07046.1 KX905163_p3 head morphogenesis protein phrog_115 minor head protein head and packaging 1 3018 3773
ARB07069.1 KX905163_p26 hypothetical protein phrog_1243 unknown function unknown function 1 19536 19718
ARB07053.1 KX905163_p10 hypothetical protein phrog_525 unknown function unknown function 1 6763 7212
ARB07059.1 KX905163_p16 LysM domain/BON superfamily protein phrog_380 endolysin lysis 1 12736 13371
ARB07114.1 KX905163_p71 hypothetical protein phrog_3548 unknown function unknown function 1 53671 54213
ARB07092.1 KX905163_p49 hypothetical protein phrog_14275 unknown function unknown function 1 37638 38156
ARB07049.1 KX905163_p6 hypothetical protein phrog_2724 unknown function unknown function 1 5394 5675
ARB07083.1 KX905163_p40 nitroreductase phrog_18935 nitroreductase other 1 30656 31168
ARB07088.1 KX905163_p45 RepB family protein phrog_2172 unknown function unknown function -1 33330 34544
ARB07087.1 KX905163_p44 hypothetical protein phrog_738 unknown function unknown function -1 32977 33126