| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX911187 |
Definition |
Rathayibacter phage NCPPB3778, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
44520 |
Host Name |
Rathayibacter toxicus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
52.93 |
Number of singletons |
48 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APZ81711.1 | KX911187_p55 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 35057 | 35362 |
| APZ81713.1 | KX911187_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34612 | 34731 |
| APZ81694.1 | KX911187_p72 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 42684 | 42935 |
| APZ81723.2 | KX911187_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29921 | 30304 |
| APZ81747.1 | KX911187_p19 | peptidase domain protein | singleton | unknown function | unknown function | 1 | 15529 | 16224 |
| APZ81693.1 | KX911187_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42939 | 43133 |
| APZ81725.1 | KX911187_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29490 | 29711 |
| APZ81756.1 | KX911187_p10 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 7002 | 7286 |
| APZ81698.1 | KX911187_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41471 | 41743 |
| APZ81750.1 | KX911187_p16 | hypothetical protein | phrog_5577 | minor tail protein | tail | 1 | 12565 | 13320 |
| APZ81739.1 | KX911187_p27 | alpha-L-rhamnosidase | singleton | unknown function | unknown function | 1 | 21273 | 23774 |
| APZ81701.2 | KX911187_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40474 | 40806 |
| APZ81754.1 | KX911187_p12 | hypothetical protein | phrog_10909 | major tail protein | tail | 1 | 7745 | 8590 |
| APZ81720.1 | KX911187_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31251 | 31547 |
| APZ81749.1 | KX911187_p17 | hypothetical protein | phrog_1885 | minor tail protein | tail | 1 | 13329 | 14432 |
| APZ81746.2 | KX911187_p20 | HNH endonuclease | singleton | unknown function | unknown function | -1 | 16429 | 16785 |
| APZ81728.1 | KX911187_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28461 | 28805 |
| APZ81735.1 | KX911187_p31 | hypothetical protein | phrog_1366 | unknown function | unknown function | -1 | 25660 | 26562 |
| APZ81689.1 | KX911187_p77 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44119 | 44403 |
| APZ81741.1 | KX911187_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19971 | 20453 |
| APZ81761.1 | KX911187_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4794 | 5153 |
| APZ81763.1 | KX911187_p3 | exodeoxyribonuclease V gamma chain | phrog_113 | portal protein | head and packaging | 1 | 2223 | 3521 |
| APZ81690.1 | KX911187_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43782 | 44081 |
| APZ81724.1 | KX911187_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29704 | 29907 |
| APZ81716.1 | KX911187_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32523 | 32714 |
| APZ81697.1 | KX911187_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41785 | 42039 |
| APZ81710.1 | KX911187_p56 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 35369 | 35743 |
| APZ81704.1 | KX911187_p62 | triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 39487 | 39915 |
| APZ81705.1 | KX911187_p61 | HNH homing endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38823 | 39335 |
| APZ81717.1 | KX911187_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32256 | 32465 |
| APZ81753.1 | KX911187_p13 | hypothetical protein | phrog_18582 | tail assembly chaperone | tail | 1 | 8663 | 9019 |
| APZ81702.2 | KX911187_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40136 | 40477 |
| APZ81727.1 | KX911187_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28885 | 29280 |
| APZ81715.1 | KX911187_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32707 | 33060 |
| APZ81706.1 | KX911187_p60 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 37569 | 38792 |
| APZ81700.1 | KX911187_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40811 | 40936 |
| APZ81760.1 | KX911187_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5168 | 6085 |
| APZ81714.1 | KX911187_p52 | HNH homing endonuclease | singleton | unknown function | unknown function | -1 | 33065 | 34612 |
| APZ81721.1 | KX911187_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30616 | 30993 |
| APZ81734.1 | KX911187_p32 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 26614 | 27432 |
| APZ81703.1 | KX911187_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39931 | 40179 |
| APZ81759.1 | KX911187_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6085 | 6249 |
| APZ81762.1 | KX911187_p4 | Clp protease-like protein | phrog_2976 | head maturation protease | head and packaging | 1 | 3518 | 4792 |
| APZ81751.1 | KX911187_p15 | tail length tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9380 | 12568 |
| APZ81699.1 | KX911187_p67 | hypothetical protein | phrog_1281 | unknown function | unknown function | 1 | 40958 | 41401 |
| APZ81752.2 | KX911187_p14 | tail assembly chaperone protein | singleton | unknown function | unknown function | 1 | 9085 | 9366 |
| APZ81740.1 | KX911187_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20456 | 21283 |
| APZ81708.1 | KX911187_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36310 | 36594 |
| APZ81691.1 | KX911187_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43317 | 43748 |
| APZ81707.1 | KX911187_p59 | primosomal protein I | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 36598 | 37368 |
| APZ81748.1 | KX911187_p18 | flagellar hook-length control protein | singleton | unknown function | unknown function | 1 | 14432 | 15529 |
| APZ81743.1 | KX911187_p23 | exonuclease | singleton | unknown function | unknown function | 1 | 19100 | 19465 |
| APZ81737.1 | KX911187_p29 | DNA polymerase III subunit epsilon | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 24550 | 25263 |
| APZ81733.1 | KX911187_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27425 | 27604 |
| APZ81745.1 | KX911187_p21 | peptidase domain protein | phrog_291 | endolysin | lysis | 1 | 17007 | 18566 |
| APZ81731.1 | KX911187_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27875 | 28009 |
| APZ81695.1 | KX911187_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42464 | 42682 |
| APZ81744.1 | KX911187_p22 | hypothetical protein | phrog_21352 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 18624 | 19103 |
| APZ81709.1 | KX911187_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36014 | 36166 |
| APZ81742.1 | KX911187_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19458 | 19949 |
| APZ81764.2 | KX911187_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 752 | 2203 |
| APZ81726.1 | KX911187_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29342 | 29500 |
| APZ81758.1 | KX911187_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6275 | 6637 |
| APZ81718.1 | KX911187_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32035 | 32256 |
| APZ81730.1 | KX911187_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28175 | 28288 |
| APZ81696.1 | KX911187_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42029 | 42442 |
| APZ81712.1 | KX911187_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34914 | 35060 |
| APZ81738.1 | KX911187_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23786 | 24499 |
| APZ81755.1 | KX911187_p11 | hypothetical protein | phrog_6485 | tail terminator | connector | 1 | 7283 | 7702 |
| APZ81765.1 | KX911187_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 115 | 681 |
| APZ81729.1 | KX911187_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28291 | 28464 |
| APZ81757.1 | KX911187_p9 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6637 | 7002 |
| APZ81722.1 | KX911187_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30434 | 30616 |
| APZ81719.1 | KX911187_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31636 | 31929 |
| APZ81692.1 | KX911187_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43138 | 43320 |
| APZ81736.2 | KX911187_p30 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 25250 | 25660 |
| APZ81732.1 | KX911187_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27693 | 27833 |