Genomic map of Rathayibacter phage NCPPB3778 (KX911187)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KX911187
Definition
Rathayibacter phage NCPPB3778, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
44520
Host Name
Rathayibacter toxicus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
52.93
Number of singletons
48
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APZ81711.1 KX911187_p55 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation 1 35057 35362
APZ81713.1 KX911187_p53 hypothetical protein singleton unknown function unknown function -1 34612 34731
APZ81694.1 KX911187_p72 hypothetical protein phrog_474 phosphofructokinase other 1 42684 42935
APZ81723.2 KX911187_p43 hypothetical protein singleton unknown function unknown function -1 29921 30304
APZ81747.1 KX911187_p19 peptidase domain protein singleton unknown function unknown function 1 15529 16224
APZ81693.1 KX911187_p73 hypothetical protein singleton unknown function unknown function 1 42939 43133
APZ81725.1 KX911187_p41 hypothetical protein singleton unknown function unknown function -1 29490 29711
APZ81756.1 KX911187_p10 hypothetical protein phrog_387 neck protein connector 1 7002 7286
APZ81698.1 KX911187_p68 hypothetical protein singleton unknown function unknown function 1 41471 41743
APZ81750.1 KX911187_p16 hypothetical protein phrog_5577 minor tail protein tail 1 12565 13320
APZ81739.1 KX911187_p27 alpha-L-rhamnosidase singleton unknown function unknown function 1 21273 23774
APZ81701.2 KX911187_p65 hypothetical protein singleton unknown function unknown function 1 40474 40806
APZ81754.1 KX911187_p12 hypothetical protein phrog_10909 major tail protein tail 1 7745 8590
APZ81720.1 KX911187_p46 hypothetical protein singleton unknown function unknown function -1 31251 31547
APZ81749.1 KX911187_p17 hypothetical protein phrog_1885 minor tail protein tail 1 13329 14432
APZ81746.2 KX911187_p20 HNH endonuclease singleton unknown function unknown function -1 16429 16785
APZ81728.1 KX911187_p38 hypothetical protein singleton unknown function unknown function -1 28461 28805
APZ81735.1 KX911187_p31 hypothetical protein phrog_1366 unknown function unknown function -1 25660 26562
APZ81689.1 KX911187_p77 hypothetical protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44119 44403
APZ81741.1 KX911187_p25 hypothetical protein singleton unknown function unknown function 1 19971 20453
APZ81761.1 KX911187_p5 scaffolding protein phrog_673 head scaffolding protein head and packaging 1 4794 5153
APZ81763.1 KX911187_p3 exodeoxyribonuclease V gamma chain phrog_113 portal protein head and packaging 1 2223 3521
APZ81690.1 KX911187_p76 hypothetical protein singleton unknown function unknown function 1 43782 44081
APZ81724.1 KX911187_p42 hypothetical protein singleton unknown function unknown function -1 29704 29907
APZ81716.1 KX911187_p50 hypothetical protein singleton unknown function unknown function -1 32523 32714
APZ81697.1 KX911187_p69 hypothetical protein singleton unknown function unknown function 1 41785 42039
APZ81710.1 KX911187_p56 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation 1 35369 35743
APZ81704.1 KX911187_p62 triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 39487 39915
APZ81705.1 KX911187_p61 HNH homing endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38823 39335
APZ81717.1 KX911187_p49 hypothetical protein singleton unknown function unknown function -1 32256 32465
APZ81753.1 KX911187_p13 hypothetical protein phrog_18582 tail assembly chaperone tail 1 8663 9019
APZ81702.2 KX911187_p64 hypothetical protein singleton unknown function unknown function 1 40136 40477
APZ81727.1 KX911187_p39 hypothetical protein singleton unknown function unknown function -1 28885 29280
APZ81715.1 KX911187_p51 hypothetical protein singleton unknown function unknown function -1 32707 33060
APZ81706.1 KX911187_p60 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 37569 38792
APZ81700.1 KX911187_p66 hypothetical protein singleton unknown function unknown function 1 40811 40936
APZ81760.1 KX911187_p6 major capsid protein phrog_1650 major head protein head and packaging 1 5168 6085
APZ81714.1 KX911187_p52 HNH homing endonuclease singleton unknown function unknown function -1 33065 34612
APZ81721.1 KX911187_p45 hypothetical protein singleton unknown function unknown function -1 30616 30993
APZ81734.1 KX911187_p32 exonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 26614 27432
APZ81703.1 KX911187_p63 hypothetical protein singleton unknown function unknown function 1 39931 40179
APZ81759.1 KX911187_p7 hypothetical protein singleton unknown function unknown function 1 6085 6249
APZ81762.1 KX911187_p4 Clp protease-like protein phrog_2976 head maturation protease head and packaging 1 3518 4792
APZ81751.1 KX911187_p15 tail length tape-measure protein phrog_58 tail length tape measure protein tail 1 9380 12568
APZ81699.1 KX911187_p67 hypothetical protein phrog_1281 unknown function unknown function 1 40958 41401
APZ81752.2 KX911187_p14 tail assembly chaperone protein singleton unknown function unknown function 1 9085 9366
APZ81740.1 KX911187_p26 hypothetical protein singleton unknown function unknown function 1 20456 21283
APZ81708.1 KX911187_p58 hypothetical protein singleton unknown function unknown function 1 36310 36594
APZ81691.1 KX911187_p75 hypothetical protein singleton unknown function unknown function 1 43317 43748
APZ81707.1 KX911187_p59 primosomal protein I phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 36598 37368
APZ81748.1 KX911187_p18 flagellar hook-length control protein singleton unknown function unknown function 1 14432 15529
APZ81743.1 KX911187_p23 exonuclease singleton unknown function unknown function 1 19100 19465
APZ81737.1 KX911187_p29 DNA polymerase III subunit epsilon phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 24550 25263
APZ81733.1 KX911187_p33 hypothetical protein singleton unknown function unknown function -1 27425 27604
APZ81745.1 KX911187_p21 peptidase domain protein phrog_291 endolysin lysis 1 17007 18566
APZ81731.1 KX911187_p35 hypothetical protein singleton unknown function unknown function -1 27875 28009
APZ81695.1 KX911187_p71 hypothetical protein singleton unknown function unknown function 1 42464 42682
APZ81744.1 KX911187_p22 hypothetical protein phrog_21352 membrane protein moron, auxiliary metabolic gene and host takeover 1 18624 19103
APZ81709.1 KX911187_p57 hypothetical protein singleton unknown function unknown function -1 36014 36166
APZ81742.1 KX911187_p24 hypothetical protein singleton unknown function unknown function 1 19458 19949
APZ81764.2 KX911187_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 752 2203
APZ81726.1 KX911187_p40 hypothetical protein singleton unknown function unknown function -1 29342 29500
APZ81758.1 KX911187_p8 hypothetical protein singleton unknown function unknown function 1 6275 6637
APZ81718.1 KX911187_p48 hypothetical protein singleton unknown function unknown function -1 32035 32256
APZ81730.1 KX911187_p36 hypothetical protein singleton unknown function unknown function -1 28175 28288
APZ81696.1 KX911187_p70 hypothetical protein singleton unknown function unknown function 1 42029 42442
APZ81712.1 KX911187_p54 hypothetical protein singleton unknown function unknown function 1 34914 35060
APZ81738.1 KX911187_p28 hypothetical protein singleton unknown function unknown function 1 23786 24499
APZ81755.1 KX911187_p11 hypothetical protein phrog_6485 tail terminator connector 1 7283 7702
APZ81765.1 KX911187_p1 terminase small subunit phrog_1496 terminase small subunit head and packaging 1 115 681
APZ81729.1 KX911187_p37 hypothetical protein singleton unknown function unknown function -1 28291 28464
APZ81757.1 KX911187_p9 hypothetical protein phrog_501 head closure Hc1 connector 1 6637 7002
APZ81722.1 KX911187_p44 hypothetical protein singleton unknown function unknown function -1 30434 30616
APZ81719.1 KX911187_p47 hypothetical protein singleton unknown function unknown function -1 31636 31929
APZ81692.1 KX911187_p74 hypothetical protein singleton unknown function unknown function 1 43138 43320
APZ81736.2 KX911187_p30 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 25250 25660
APZ81732.1 KX911187_p34 hypothetical protein singleton unknown function unknown function -1 27693 27833