| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX961385 |
Definition |
Bordetella virus LK3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vojvodinavirus; unclassified Vojvodinavirus. |
DB of origin |
NUCCORE |
Length |
59831 |
Host Name |
Bordetella bronchiseptica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
63.92 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APL99061.1 | KX961385_p1 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 727 | 2472 |
| APL99076.1 | KX961385_p16 | thymidylate synthase/deoxyuridylate hydroxymethyltransferase | phrog_5131 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 15445 | 16509 |
| APL99138.1 | KX961385_p78 | F5/8 type C domain protein | phrog_10304 | virion structural protein | head and packaging | 1 | 59115 | 59750 |
| APL99131.1 | KX961385_p71 | tail length tape measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 49734 | 52553 |
| APL99064.1 | KX961385_p4 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 3660 | 4490 |
| APL99077.1 | KX961385_p17 | 5'-deoxynucleotidase | phrog_6047 | unknown function | unknown function | 1 | 16502 | 17083 |
| APL99129.1 | KX961385_p69 | tail chaperonin | phrog_3817 | tail chaperonin | tail | 1 | 49035 | 49301 |
| APL99115.1 | KX961385_p55 | minor structural protein | phrog_241 | head morphogenesis | head and packaging | 1 | 39114 | 40322 |
| APL99090.1 | KX961385_p30 | hypothetical protein | phrog_8938 | unknown function | unknown function | 1 | 25998 | 26258 |
| APL99120.1 | KX961385_p60 | hypothetical protein | phrog_8884 | unknown function | unknown function | 1 | 43778 | 43948 |
| APL99069.1 | KX961385_p9 | hypothetical protein | phrog_6364 | unknown function | unknown function | 1 | 9782 | 10642 |
| APL99107.1 | KX961385_p47 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 33367 | 33789 |
| APL99073.1 | KX961385_p13 | triphosphate hydrolase | phrog_800 | terminase small subunit | head and packaging | 1 | 13262 | 13828 |
| APL99135.1 | KX961385_p75 | tail assembly protein | phrog_1196 | tail assembly chaperone | tail | 1 | 55370 | 55576 |
| APL99132.1 | KX961385_p72 | structural protein | phrog_1082 | tail assembly protein | tail | 1 | 52540 | 53727 |
| APL99068.1 | KX961385_p8 | hypothetical protein | phrog_7790 | unknown function | unknown function | 1 | 8796 | 9716 |
| APL99105.1 | KX961385_p45 | hypothetical protein | phrog_8760 | unknown function | unknown function | 1 | 32901 | 33113 |
| APL99118.1 | KX961385_p58 | hypothetical protein | phrog_14870 | unknown function | unknown function | 1 | 42362 | 43126 |
| APL99094.1 | KX961385_p34 | hypothetical protein | phrog_9190 | unknown function | unknown function | 1 | 27643 | 27951 |
| APL99113.1 | KX961385_p53 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 37512 | 39020 |
| APL99112.1 | KX961385_p52 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 35885 | 37453 |
| APL99079.1 | KX961385_p19 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17634 | 19616 |
| APL99063.1 | KX961385_p3 | hypothetical protein | phrog_2378 | unknown function | unknown function | 1 | 2899 | 3453 |
| APL99096.1 | KX961385_p36 | RNA polymerase-binding protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 28794 | 28985 |
| APL99130.1 | KX961385_p70 | virion structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 49285 | 49731 |
| APL99092.1 | KX961385_p32 | hypothetical protein | phrog_7569 | unknown function | unknown function | 1 | 26863 | 27339 |
| APL99123.1 | KX961385_p63 | endolysin | phrog_669 | endolysin | lysis | 1 | 44845 | 45585 |
| APL99100.1 | KX961385_p40 | DNA binding domain protein | phrog_3628 | unknown function | unknown function | 1 | 29999 | 30883 |
| APL99109.1 | KX961385_p49 | hypothetical protein | phrog_8564 | unknown function | unknown function | 1 | 33992 | 34201 |
| APL99091.1 | KX961385_p31 | pyrophosphatase | phrog_9147 | unknown function | unknown function | 1 | 26255 | 26866 |
| APL99133.1 | KX961385_p73 | virion structural protein | phrog_15205 | tail assembly protein | tail | 1 | 53724 | 55127 |
| APL99101.1 | KX961385_p41 | diguanylate-cyclase GGDEF domain protein | phrog_5594 | unknown function | unknown function | 1 | 30887 | 31357 |
| APL99078.1 | KX961385_p18 | hypothetical protein | phrog_5839 | unknown function | unknown function | 1 | 17245 | 17634 |
| APL99081.1 | KX961385_p21 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 19927 | 20589 |
| APL99102.1 | KX961385_p42 | transcription elongation protein | phrog_6361 | unknown function | unknown function | 1 | 31442 | 32047 |
| APL99088.1 | KX961385_p28 | hypothetical protein | phrog_8203 | unknown function | unknown function | 1 | 24446 | 25630 |
| APL99104.1 | KX961385_p44 | hypothetical protein | phrog_10108 | unknown function | unknown function | 1 | 32549 | 32878 |
| APL99099.1 | KX961385_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29827 | 29979 |
| APL99124.1 | KX961385_p64 | structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 45576 | 46094 |
| APL99086.1 | KX961385_p26 | hypothetical protein | phrog_17845 | unknown function | unknown function | 1 | 23998 | 24216 |
| APL99110.1 | KX961385_p50 | nucleotide pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 34198 | 34731 |
| APL99084.1 | KX961385_p24 | integrase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 21293 | 23719 |
| APL99127.1 | KX961385_p67 | major structural protein | phrog_290 | minor tail protein | tail | 1 | 46957 | 48492 |
| APL99093.1 | KX961385_p33 | hypothetical protein | phrog_9341 | unknown function | unknown function | 1 | 27350 | 27640 |
| APL99125.1 | KX961385_p65 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 46096 | 46464 |
| APL99126.1 | KX961385_p66 | structural protein | phrog_179 | tail terminator | connector | 1 | 46461 | 46916 |
| APL99083.1 | KX961385_p23 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 20977 | 21291 |
| APL99062.1 | KX961385_p2 | hypothetical protein | phrog_5888 | unknown function | unknown function | 1 | 2469 | 2831 |
| APL99065.1 | KX961385_p5 | ATP-binding protein | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 4563 | 5762 |
| APL99098.1 | KX961385_p38 | hypothetical protein | phrog_8020 | unknown function | unknown function | 1 | 29393 | 29725 |
| APL99080.1 | KX961385_p20 | DNA primase | phrog_8389 | unknown function | unknown function | 1 | 19613 | 19930 |
| APL99137.1 | KX961385_p77 | coagulation factor 5/8 type domain protein | phrog_10304 | virion structural protein | head and packaging | 1 | 58447 | 59064 |
| APL99082.1 | KX961385_p22 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 20582 | 20980 |
| APL99122.1 | KX961385_p62 | holin | phrog_8226 | holin | lysis | 1 | 44513 | 44860 |
| APL99089.1 | KX961385_p29 | hypothetical protein | phrog_9297 | unknown function | unknown function | 1 | 25627 | 25983 |
| APL99067.1 | KX961385_p7 | ribonucleotide-diphosphate reductase subunit beta | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 7606 | 8577 |
| APL99071.1 | KX961385_p11 | threonine dehydratase | phrog_7093 | threonine dehydratase | other | 1 | 10866 | 11711 |
| APL99134.1 | KX961385_p74 | virion structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 55140 | 55373 |
| APL99085.1 | KX961385_p25 | hypothetical protein | phrog_2053 | unknown function | unknown function | 1 | 23731 | 23943 |
| APL99111.1 | KX961385_p51 | terminase small subunit | phrog_4044 | terminase small subunit | head and packaging | 1 | 35373 | 35885 |
| APL99117.1 | KX961385_p57 | major structural protein | phrog_212 | major head protein | head and packaging | 1 | 41341 | 42273 |
| APL99106.1 | KX961385_p46 | hypothetical protein | phrog_6858 | unknown function | unknown function | 1 | 33110 | 33370 |
| APL99121.1 | KX961385_p61 | Rz protein | phrog_1327 | Rz-like spanin | lysis | 1 | 43950 | 44516 |
| APL99075.1 | KX961385_p15 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 14868 | 15431 |
| APL99072.1 | KX961385_p12 | DNA repair photolyase | phrog_9252 | DNA repair photolyase | DNA, RNA and nucleotide metabolism | 1 | 11782 | 13236 |
| APL99097.1 | KX961385_p37 | hypothetical protein | phrog_15793 | unknown function | unknown function | 1 | 29072 | 29335 |
| APL99119.1 | KX961385_p59 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 43149 | 43742 |
| APL99066.1 | KX961385_p6 | ribonucleotide-diphosphate reductase subunit alpha | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 5915 | 7609 |
| APL99114.1 | KX961385_p54 | hypothetical protein | phrog_9943 | unknown function | unknown function | 1 | 39017 | 39130 |
| APL99136.1 | KX961385_p76 | virion structural protein | phrog_1101 | tail protein | tail | 1 | 55617 | 58370 |
| APL99116.1 | KX961385_p56 | structural protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 40386 | 41150 |
| APL99095.1 | KX961385_p35 | ribonuclease T | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28232 | 28801 |
| APL99087.1 | KX961385_p27 | hypothetical protein | phrog_8293 | unknown function | unknown function | 1 | 24221 | 24418 |
| APL99103.1 | KX961385_p43 | antirestriction protein | phrog_10132 | anti-restriction protein | moron, auxiliary metabolic gene and host takeover | 1 | 32077 | 32490 |
| APL99070.1 | KX961385_p10 | hypothetical protein | phrog_7696 | unknown function | unknown function | 1 | 10639 | 10869 |
| APL99128.1 | KX961385_p68 | structural protein | phrog_313 | Tail assembly chaperone | tail | 1 | 48553 | 49011 |
| APL99108.1 | KX961385_p48 | hypothetical protein | phrog_18256 | unknown function | unknown function | 1 | 33786 | 33992 |
| APL99074.1 | KX961385_p14 | hypothetical protein | phrog_2396 | unknown function | unknown function | 1 | 13828 | 14841 |