| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KX982260 |
Definition |
Alteromonas phage PB15, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
37333 |
Host Name |
Alteromonas gracilis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
45.52 |
Number of singletons |
26 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APC46552.1 | KX982260_p30 | hypothetical protein | phrog_268 | unknown function | unknown function | -1 | 16806 | 16991 |
| APC46536.1 | KX982260_p14 | gene transfer agent prohead protease | phrog_80 | head maturation protease | head and packaging | -1 | 8786 | 9409 |
| APC46564.1 | KX982260_p42 | multimodular transpeptidase-transglycosylase | phrog_2300 | unknown function | unknown function | 1 | 23406 | 23888 |
| APC46531.1 | KX982260_p9 | hypothetical protein | phrog_13935 | unknown function | unknown function | -1 | 5424 | 5972 |
| APC46559.1 | KX982260_p37 | hypothetical protein | phrog_757 | DNA methyltransferase | other | -1 | 18948 | 19538 |
| APC46554.1 | KX982260_p32 | hypothetical protein | phrog_31492 | unknown function | unknown function | -1 | 17347 | 17598 |
| APC46574.1 | KX982260_p52 | hypothetical protein | phrog_1273 | unknown function | unknown function | 1 | 29274 | 29588 |
| APC46546.1 | KX982260_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14462 | 15526 |
| APC46581.1 | KX982260_p59 | cell wall surface anchor family protein | singleton | unknown function | unknown function | -1 | 31907 | 34153 |
| APC46582.1 | KX982260_p60 | PE family protein | phrog_11439 | tail fiber protein | tail | -1 | 34153 | 36348 |
| APC46573.1 | KX982260_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29138 | 29272 |
| APC46530.1 | KX982260_p8 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | -1 | 5089 | 5427 |
| APC46527.1 | KX982260_p5 | major tail protein | phrog_1407 | major tail protein | tail | -1 | 3819 | 4217 |
| APC46561.1 | KX982260_p39 | transcriptional regulator | phrog_35 | transcriptional repressor | transcription regulation | -1 | 21975 | 22217 |
| APC46553.1 | KX982260_p31 | protein ninX | phrog_444 | unknown function | unknown function | -1 | 16985 | 17347 |
| APC46566.1 | KX982260_p44 | YqaJ-like viral recombinase domain-containing protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24352 | 25317 |
| APC46549.1 | KX982260_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16058 | 16210 |
| APC46550.1 | KX982260_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16210 | 16437 |
| APC46525.1 | KX982260_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3210 | 3401 |
| APC46562.1 | KX982260_p40 | ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 22345 | 23025 |
| APC46563.1 | KX982260_p41 | hypothetical protein | phrog_2480 | unknown function | unknown function | 1 | 23018 | 23401 |
| APC46538.1 | KX982260_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9677 | 9847 |
| APC46569.1 | KX982260_p47 | VRR-NUC domain-containing protein | phrog_824 | unknown function | unknown function | 1 | 27240 | 27593 |
| APC46544.1 | KX982260_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13780 | 14175 |
| APC46523.1 | KX982260_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 754 | 1284 |
| APC46542.1 | KX982260_p20 | terminase | phrog_2 | terminase large subunit | head and packaging | -1 | 12148 | 13293 |
| APC46547.1 | KX982260_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15523 | 15765 |
| APC46570.1 | KX982260_p48 | dUTP diphosphatase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 27601 | 28041 |
| APC46534.1 | KX982260_p12 | pathogenesis-related transcriptional factor and ERF protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6954 | 7493 |
| APC46565.1 | KX982260_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23930 | 24352 |
| APC46579.1 | KX982260_p57 | hypothetical protein | phrog_937 | hemolysin | other | -1 | 30928 | 31233 |
| APC46539.1 | KX982260_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9844 | 10056 |
| APC46541.1 | KX982260_p19 | gene transfer agent portal protein | phrog_12 | portal protein | head and packaging | -1 | 10817 | 12100 |
| APC46560.1 | KX982260_p38 | TOPRIM domain-containing protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | -1 | 19990 | 21972 |
| APC46583.1 | KX982260_p61 | hypothetical protein | phrog_11633 | unknown function | unknown function | -1 | 36348 | 37226 |
| APC46524.1 | KX982260_p2 | tail length tape-measure protein 1 | phrog_9483 | tail length tape measure protein | tail | -1 | 1267 | 3219 |
| APC46578.1 | KX982260_p56 | response regulator | phrog_5982 | unknown function | unknown function | -1 | 30533 | 30910 |
| APC46535.1 | KX982260_p13 | major capsid protein | phrog_10 | major head protein | head and packaging | -1 | 7524 | 8759 |
| APC46537.1 | KX982260_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9534 | 9680 |
| APC46533.1 | KX982260_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6617 | 6796 |
| APC46558.1 | KX982260_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18646 | 18876 |
| APC46575.1 | KX982260_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29590 | 29754 |
| APC46532.1 | KX982260_p10 | gene transfer agent protein | phrog_442 | head-tail adaptor | connector | -1 | 6029 | 6616 |
| APC46545.1 | KX982260_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14172 | 14462 |
| APC46551.1 | KX982260_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16574 | 16813 |
| APC46528.1 | KX982260_p6 | hypothetical protein | phrog_176 | tail terminator | connector | -1 | 4221 | 4643 |
| APC46576.1 | KX982260_p54 | hypothetical protein | phrog_3427 | holin | lysis | -1 | 29777 | 30178 |
| APC46543.1 | KX982260_p21 | small terminase | phrog_309 | terminase small subunit | head and packaging | -1 | 13340 | 13705 |
| APC46557.1 | KX982260_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18491 | 18649 |
| APC46572.1 | KX982260_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28802 | 28963 |
| APC46577.1 | KX982260_p55 | carboxypeptidase | phrog_894 | endolysin | lysis | -1 | 30180 | 30536 |
| APC46571.1 | KX982260_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28253 | 28576 |
| APC46580.1 | KX982260_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31251 | 31718 |
| APC46567.1 | KX982260_p45 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 25321 | 26919 |
| APC46568.1 | KX982260_p46 | hypothetical protein | phrog_31018 | unknown function | unknown function | 1 | 26900 | 27271 |
| APC46548.1 | KX982260_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15879 | 16061 |
| APC46529.1 | KX982260_p7 | tail assembly protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 4640 | 5092 |
| APC46556.1 | KX982260_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17857 | 18498 |
| APC46540.1 | KX982260_p18 | minor capsid protein | phrog_2468 | head morphogenesis | head and packaging | -1 | 10048 | 10827 |
| APC46555.1 | KX982260_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17589 | 17789 |
| APC46526.1 | KX982260_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3431 | 3817 |