| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY000084 |
Definition |
Staphylococcus phage SCH1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus SCH1. |
DB of origin |
NUCCORE |
Length |
18023 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
21 |
%GC |
29.34 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD20930.1 | KY000084_p4 | single stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 911 | 1279 |
| APD20932.1 | KY000084_p6 | hypothetical protein | phrog_7529 | unknown function | unknown function | 1 | 1512 | 1925 |
| APD20933.1 | KY000084_p7 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 2091 | 2573 |
| APD20935.1 | KY000084_p9 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3884 | 6169 |
| APD20942.1 | KY000084_p16 | hypothetical protein | phrog_287 | minor tail protein | tail | -1 | 12213 | 14156 |
| APD20938.1 | KY000084_p12 | hypothetical protein | phrog_29905 | unknown function | unknown function | 1 | 7896 | 8078 |
| APD20941.1 | KY000084_p15 | N-acetylmuramoyl-L-alanine amidase | phrog_635 | endolysin | lysis | -1 | 11449 | 12201 |
| APD20940.1 | KY000084_p14 | tail fibers protein | phrog_9604 | tail protein | tail | -1 | 9941 | 11386 |
| APD20939.1 | KY000084_p13 | tail fibers protein | phrog_2248 | tail protein | tail | -1 | 8121 | 9884 |
| APD20936.1 | KY000084_p10 | hypothetical protein | phrog_5979 | unknown function | unknown function | -1 | 6283 | 7722 |
| APD20943.1 | KY000084_p17 | hypothetical protein | phrog_3225 | adaptor Ad4 | connector | -1 | 14169 | 14924 |
| APD20946.1 | KY000084_p20 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 17133 | 17315 |
| APD20929.1 | KY000084_p3 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 651 | 887 |
| APD20934.1 | KY000084_p8 | DNA packaging protein | phrog_2150 | terminase | head and packaging | 1 | 2621 | 3868 |
| APD20937.1 | KY000084_p11 | hypothetical protein | phrog_16802 | unknown function | unknown function | -1 | 7697 | 7861 |
| APD20927.1 | KY000084_p1 | hypothetical protein | phrog_10178 | unknown function | unknown function | 1 | 141 | 338 |
| APD20928.1 | KY000084_p2 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 331 | 633 |
| APD20945.1 | KY000084_p19 | capsid and scaffold protein | phrog_2006 | major head protein | head and packaging | -1 | 15915 | 17126 |
| APD20944.1 | KY000084_p18 | collar protein | phrog_2038 | upper collar connector | connector | -1 | 14917 | 15900 |
| APD20947.1 | KY000084_p21 | hypothetical protein | phrog_7102 | unknown function | unknown function | -1 | 17329 | 17736 |
| APD20931.1 | KY000084_p5 | hypothetical protein | phrog_7019 | unknown function | unknown function | 1 | 1330 | 1509 |