Genomic map of Staphylococcus phage SCH1 (KY000084)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY000084
Definition
Staphylococcus phage SCH1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus SCH1.
DB of origin
NUCCORE
Length
18023
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
21
%GC
29.34
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APD20930.1 KY000084_p4 single stranded DNA-binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 911 1279
APD20932.1 KY000084_p6 hypothetical protein phrog_7529 unknown function unknown function 1 1512 1925
APD20933.1 KY000084_p7 hypothetical protein phrog_6099 unknown function unknown function 1 2091 2573
APD20935.1 KY000084_p9 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 3884 6169
APD20942.1 KY000084_p16 hypothetical protein phrog_287 minor tail protein tail -1 12213 14156
APD20938.1 KY000084_p12 hypothetical protein phrog_29905 unknown function unknown function 1 7896 8078
APD20941.1 KY000084_p15 N-acetylmuramoyl-L-alanine amidase phrog_635 endolysin lysis -1 11449 12201
APD20940.1 KY000084_p14 tail fibers protein phrog_9604 tail protein tail -1 9941 11386
APD20939.1 KY000084_p13 tail fibers protein phrog_2248 tail protein tail -1 8121 9884
APD20936.1 KY000084_p10 hypothetical protein phrog_5979 unknown function unknown function -1 6283 7722
APD20943.1 KY000084_p17 hypothetical protein phrog_3225 adaptor Ad4 connector -1 14169 14924
APD20946.1 KY000084_p20 hypothetical protein phrog_6289 unknown function unknown function -1 17133 17315
APD20929.1 KY000084_p3 hypothetical protein phrog_6346 unknown function unknown function 1 651 887
APD20934.1 KY000084_p8 DNA packaging protein phrog_2150 terminase head and packaging 1 2621 3868
APD20937.1 KY000084_p11 hypothetical protein phrog_16802 unknown function unknown function -1 7697 7861
APD20927.1 KY000084_p1 hypothetical protein phrog_10178 unknown function unknown function 1 141 338
APD20928.1 KY000084_p2 hypothetical protein phrog_6274 unknown function unknown function 1 331 633
APD20945.1 KY000084_p19 capsid and scaffold protein phrog_2006 major head protein head and packaging -1 15915 17126
APD20944.1 KY000084_p18 collar protein phrog_2038 upper collar connector connector -1 14917 15900
APD20947.1 KY000084_p21 hypothetical protein phrog_7102 unknown function unknown function -1 17329 17736
APD20931.1 KY000084_p5 hypothetical protein phrog_7019 unknown function unknown function 1 1330 1509