| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY000085 |
Definition |
Staphylococcus phage SCH111, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; unclassified Rosenblumvirus. |
DB of origin |
NUCCORE |
Length |
18018 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
22 |
%GC |
29.34 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD20955.1 | KY000085_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2442 | 2570 |
| APD20951.1 | KY000085_p4 | single stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 911 | 1279 |
| APD20965.1 | KY000085_p18 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 14166 | 14921 |
| APD20962.1 | KY000085_p15 | tail fibers protein | phrog_9604 | tail protein | tail | -1 | 9938 | 11383 |
| APD20956.1 | KY000085_p9 | DNA packaging protein | phrog_2150 | terminase | head and packaging | 1 | 2618 | 3865 |
| APD20969.1 | KY000085_p22 | hypothetical protein | phrog_7102 | unknown function | unknown function | -1 | 17326 | 17733 |
| APD20949.1 | KY000085_p2 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 331 | 633 |
| APD20968.1 | KY000085_p21 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 17130 | 17312 |
| APD20967.1 | KY000085_p20 | capsid and scaffold protein | phrog_2006 | major head protein | head and packaging | -1 | 15912 | 17123 |
| APD20950.1 | KY000085_p3 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 651 | 887 |
| APD20964.1 | KY000085_p17 | major teichoic acid biosynthesis protein C | phrog_287 | minor tail protein | tail | -1 | 12210 | 14153 |
| APD20966.1 | KY000085_p19 | collar protein | phrog_2038 | upper collar connector | connector | -1 | 14914 | 15897 |
| APD20961.1 | KY000085_p14 | tail fibers protein | phrog_2248 | tail protein | tail | -1 | 8118 | 9881 |
| APD20959.1 | KY000085_p12 | hypothetical protein | phrog_16802 | unknown function | unknown function | -1 | 7694 | 7858 |
| APD20960.1 | KY000085_p13 | hypothetical protein | phrog_29905 | unknown function | unknown function | 1 | 7893 | 8075 |
| APD20952.1 | KY000085_p5 | hypothetical protein | phrog_7019 | unknown function | unknown function | 1 | 1330 | 1509 |
| APD20963.1 | KY000085_p16 | N-acetylmuramoyl-L-alanine amidase | phrog_635 | endolysin | lysis | -1 | 11446 | 12198 |
| APD20957.1 | KY000085_p10 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3881 | 6166 |
| APD20948.1 | KY000085_p1 | hypothetical protein | phrog_10178 | unknown function | unknown function | 1 | 141 | 338 |
| APD20954.1 | KY000085_p7 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 2089 | 2457 |
| APD20953.1 | KY000085_p6 | hypothetical protein | phrog_7529 | unknown function | unknown function | 1 | 1580 | 1909 |
| APD20958.1 | KY000085_p11 | hypothetical protein | phrog_5979 | unknown function | unknown function | -1 | 6280 | 7719 |