| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY000219 |
Definition |
Bordetella phage CN2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vojvodinavirus; Bordetella virus CN2. |
DB of origin |
NUCCORE |
Length |
62030 |
Host Name |
Bordetella bronchiseptica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
81 |
%GC |
64.03 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APL99279.1 | KY000219_p61 | hypothetical protein | phrog_14870 | unknown function | unknown function | 1 | 44560 | 45321 |
| APL99268.1 | KY000219_p50 | hypothetical protein | phrog_18256 | unknown function | unknown function | 1 | 35039 | 35245 |
| APL99258.1 | KY000219_p40 | hypothetical protein | phrog_35808 | unknown function | unknown function | 1 | 30868 | 31068 |
| APL99226.1 | KY000219_p8 | hypothetical protein | phrog_7790 | unknown function | unknown function | 1 | 8744 | 9601 |
| APL99282.1 | KY000219_p64 | Rz protein | phrog_1327 | Rz-like spanin | lysis | 1 | 46145 | 46711 |
| APL99277.1 | KY000219_p59 | structural protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 42584 | 43348 |
| APL99230.1 | KY000219_p12 | DNA repair photolyase | phrog_9252 | DNA repair photolyase | DNA, RNA and nucleotide metabolism | 1 | 11667 | 13121 |
| APL99273.1 | KY000219_p55 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 37413 | 38981 |
| APL99242.1 | KY000219_p24 | integrase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 21175 | 23601 |
| APL99228.1 | KY000219_p10 | hypothetical protein | phrog_7696 | unknown function | unknown function | 1 | 10524 | 10754 |
| APL99283.1 | KY000219_p65 | holin | phrog_8226 | holin | lysis | 1 | 46708 | 47055 |
| APL99276.1 | KY000219_p58 | minor structural protein | phrog_241 | head morphogenesis | head and packaging | 1 | 40691 | 42520 |
| APL99284.1 | KY000219_p66 | endolysin | phrog_669 | endolysin | lysis | 1 | 47040 | 47780 |
| APL99233.1 | KY000219_p15 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 14750 | 15313 |
| APL99278.1 | KY000219_p60 | major structural protein | phrog_212 | major head protein | head and packaging | 1 | 43539 | 44471 |
| APL99260.1 | KY000219_p42 | hypothetical protein | phrog_10079 | unknown function | unknown function | 1 | 31735 | 32886 |
| APL99252.1 | KY000219_p34 | hypothetical protein | phrog_9190 | unknown function | unknown function | 1 | 27522 | 27830 |
| APL99270.1 | KY000219_p52 | hypothetical protein | phrog_8564 | unknown function | unknown function | 1 | 35448 | 35657 |
| APL99221.1 | KY000219_p3 | hypothetical protein | phrog_2378 | unknown function | unknown function | 1 | 2894 | 3448 |
| APL99240.1 | KY000219_p22 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 20464 | 20862 |
| APL99266.1 | KY000219_p48 | hypothetical protein | phrog_6858 | unknown function | unknown function | 1 | 34357 | 34623 |
| APL99293.1 | KY000219_p75 | structural protein | phrog_1082 | tail assembly protein | tail | 1 | 54735 | 55922 |
| APL99257.1 | KY000219_p39 | diguanylate-cyclase GGDEF domain protein | phrog_5594 | unknown function | unknown function | 1 | 30325 | 30783 |
| APL99254.1 | KY000219_p36 | hypothetical protein | phrog_20881 | unknown function | unknown function | 1 | 28022 | 28603 |
| APL99259.1 | KY000219_p41 | transcription elongation protein SprT | phrog_6361 | unknown function | unknown function | 1 | 31068 | 31664 |
| APL99296.1 | KY000219_p78 | tail assembly protein | phrog_1196 | tail assembly chaperone | tail | 1 | 57565 | 57771 |
| APL99244.1 | KY000219_p26 | hypothetical protein | phrog_17845 | unknown function | unknown function | 1 | 23868 | 24098 |
| APL99251.1 | KY000219_p33 | hypothetical protein | phrog_9341 | unknown function | unknown function | 1 | 27229 | 27519 |
| APL99249.1 | KY000219_p31 | pyrophosphatase | phrog_9147 | unknown function | unknown function | 1 | 26134 | 26745 |
| APL99222.1 | KY000219_p4 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 3654 | 4484 |
| APL99255.1 | KY000219_p37 | exonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28884 | 29429 |
| APL99229.1 | KY000219_p11 | threonine dehydratase | phrog_7093 | threonine dehydratase | other | 1 | 10751 | 11596 |
| APL99291.1 | KY000219_p73 | virion structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 51480 | 51926 |
| APL99267.1 | KY000219_p49 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 34620 | 35042 |
| APL99287.1 | KY000219_p69 | structural protein | phrog_179 | tail terminator | connector | 1 | 48656 | 49111 |
| APL99298.1 | KY000219_p80 | tail protein | phrog_10304 | virion structural protein | head and packaging | 1 | 60651 | 61259 |
| APL99295.1 | KY000219_p77 | virion structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 57335 | 57568 |
| APL99238.1 | KY000219_p20 | hypothetical protein | phrog_8389 | unknown function | unknown function | 1 | 19495 | 19812 |
| APL99271.1 | KY000219_p53 | phosphoribosyl-ATP pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 35654 | 36268 |
| APL99289.1 | KY000219_p71 | structural protein | phrog_313 | Tail assembly chaperone | tail | 1 | 50748 | 51206 |
| APL99219.1 | KY000219_p1 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 723 | 2468 |
| APL99250.1 | KY000219_p32 | hypothetical protein | phrog_7569 | unknown function | unknown function | 1 | 26742 | 27218 |
| APL99288.1 | KY000219_p70 | major structural protein | phrog_290 | minor tail protein | tail | 1 | 49152 | 50687 |
| APL99223.1 | KY000219_p5 | ATP-binding protein | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 4557 | 5756 |
| APL99281.1 | KY000219_p63 | hypothetical protein | phrog_8884 | unknown function | unknown function | 1 | 45973 | 46143 |
| APL99275.1 | KY000219_p57 | hypothetical protein | phrog_9943 | unknown function | unknown function | 1 | 40545 | 40664 |
| APL99264.1 | KY000219_p46 | hypothetical protein | phrog_11606 | unknown function | unknown function | 1 | 33654 | 33839 |
| APL99269.1 | KY000219_p51 | hypothetical protein | phrog_30424 | unknown function | unknown function | 1 | 35245 | 35448 |
| APL99236.1 | KY000219_p18 | hypothetical protein | phrog_5839 | unknown function | unknown function | 1 | 17127 | 17516 |
| APL99237.1 | KY000219_p19 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17516 | 19498 |
| APL99256.1 | KY000219_p38 | DNA binding domain protein | phrog_3628 | unknown function | unknown function | 1 | 29495 | 30316 |
| APL99262.1 | KY000219_p44 | hypothetical protein | phrog_19733 | unknown function | unknown function | 1 | 33132 | 33431 |
| APL99261.1 | KY000219_p43 | hypothetical protein | phrog_18490 | unknown function | unknown function | 1 | 32899 | 33135 |
| APL99232.1 | KY000219_p14 | hypothetical protein | phrog_2396 | unknown function | unknown function | 1 | 13713 | 14723 |
| APL99234.1 | KY000219_p16 | thymidylate synthase/deoxyuridylate hydroxymethyltransferase | phrog_5131 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 15327 | 16391 |
| APL99224.1 | KY000219_p6 | ribonucleotide-diphosphate reductase subunit alpha | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 5909 | 7603 |
| APL99239.1 | KY000219_p21 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 19809 | 20471 |
| APL99245.1 | KY000219_p27 | hypothetical protein | phrog_8293 | unknown function | unknown function | 1 | 24103 | 24300 |
| APL99243.1 | KY000219_p25 | hypothetical protein | phrog_2053 | unknown function | unknown function | 1 | 23613 | 23825 |
| APL99231.1 | KY000219_p13 | nucleoside triphosphate hydrolase | phrog_800 | terminase small subunit | head and packaging | 1 | 13147 | 13713 |
| APL99299.1 | KY000219_p81 | F5/8 type C domain protein | phrog_10304 | virion structural protein | head and packaging | 1 | 61310 | 61945 |
| APL99220.1 | KY000219_p2 | hypothetical protein | phrog_5888 | unknown function | unknown function | 1 | 2465 | 2827 |
| APL99265.1 | KY000219_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33843 | 34364 |
| APL99263.1 | KY000219_p45 | hypothetical protein | phrog_23430 | unknown function | unknown function | 1 | 33428 | 33667 |
| APL99297.1 | KY000219_p79 | virion structural protein | phrog_1101 | tail protein | tail | 1 | 57812 | 60565 |
| APL99280.1 | KY000219_p62 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 45344 | 45937 |
| APL99290.1 | KY000219_p72 | tail chaperonin | phrog_3817 | tail chaperonin | tail | 1 | 51230 | 51496 |
| APL99225.1 | KY000219_p7 | ribonucleotide-diphosphate reductase subunit beta | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 7606 | 8571 |
| APL99247.1 | KY000219_p29 | hypothetical protein | phrog_9297 | unknown function | unknown function | 1 | 25509 | 25862 |
| APL99248.1 | KY000219_p30 | hypothetical protein | phrog_8938 | unknown function | unknown function | 1 | 25877 | 26137 |
| APL99253.1 | KY000219_p35 | hypothetical protein | phrog_19857 | unknown function | unknown function | 1 | 27889 | 28005 |
| APL99286.1 | KY000219_p68 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 48291 | 48659 |
| APL99272.1 | KY000219_p54 | terminase small subunit | phrog_4044 | terminase small subunit | head and packaging | 1 | 36901 | 37413 |
| APL99292.1 | KY000219_p74 | tail length tape measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 51929 | 54748 |
| APL99241.1 | KY000219_p23 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 20859 | 21173 |
| APL99246.1 | KY000219_p28 | hypothetical protein | phrog_8203 | unknown function | unknown function | 1 | 24328 | 25512 |
| APL99227.1 | KY000219_p9 | hypothetical protein | phrog_6364 | unknown function | unknown function | 1 | 9667 | 10527 |
| APL99235.1 | KY000219_p17 | 5'-deoxynucleotidase | phrog_6047 | unknown function | unknown function | 1 | 16384 | 16956 |
| APL99294.1 | KY000219_p76 | virion structural protein | phrog_15205 | tail assembly protein | tail | 1 | 55919 | 57322 |
| APL99274.1 | KY000219_p56 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 39040 | 40548 |
| APL99285.1 | KY000219_p67 | structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 47771 | 48289 |