| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY000220 |
Definition |
Bordetella phage FP1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vojvodinavirus; Bordetella virus FP1. |
DB of origin |
NUCCORE |
Length |
60332 |
Host Name |
Bordetella bronchiseptica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
64.18 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APL99340.1 | KY000220_p41 | transcription elongation protein SprT | phrog_6361 | unknown function | unknown function | 1 | 30423 | 31034 |
| APL99334.1 | KY000220_p35 | hypothetical protein | phrog_19857 | unknown function | unknown function | 1 | 27890 | 28006 |
| APL99321.1 | KY000220_p22 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 20465 | 20863 |
| APL99359.1 | KY000220_p60 | hypothetical protein | phrog_14870 | unknown function | unknown function | 1 | 42788 | 43549 |
| APL99374.1 | KY000220_p75 | virion structural protein | phrog_15205 | tail assembly protein | tail | 1 | 54144 | 55547 |
| APL99331.1 | KY000220_p32 | hypothetical protein | phrog_7569 | unknown function | unknown function | 1 | 26745 | 27221 |
| APL99333.1 | KY000220_p34 | hypothetical protein | phrog_9190 | unknown function | unknown function | 1 | 27525 | 27833 |
| APL99329.1 | KY000220_p30 | hypothetical protein | phrog_8938 | unknown function | unknown function | 1 | 25880 | 26140 |
| APL99335.1 | KY000220_p36 | hypothetical protein | phrog_20881 | unknown function | unknown function | 1 | 28022 | 28591 |
| APL99347.1 | KY000220_p48 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 33486 | 33896 |
| APL99304.1 | KY000220_p5 | ATP-binding protein | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 4480 | 5679 |
| APL99314.1 | KY000220_p15 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 14751 | 15314 |
| APL99377.1 | KY000220_p78 | virion structural protein | phrog_1101 | tail protein | tail | 1 | 56037 | 58790 |
| APL99341.1 | KY000220_p42 | hypothetical protein | phrog_10079 | unknown function | unknown function | 1 | 31105 | 32256 |
| APL99350.1 | KY000220_p51 | hypothetical protein | phrog_8564 | unknown function | unknown function | 1 | 34302 | 34511 |
| APL99307.1 | KY000220_p8 | hypothetical protein | phrog_7790 | unknown function | unknown function | 1 | 8715 | 9602 |
| APL99343.1 | KY000220_p44 | hypothetical protein | phrog_19733 | unknown function | unknown function | 1 | 32502 | 32801 |
| APL99322.1 | KY000220_p23 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 20860 | 21174 |
| APL99306.1 | KY000220_p7 | ribonucleotide-diphosphate reductase subunit beta | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 7529 | 8494 |
| APL99361.1 | KY000220_p62 | hypothetical protein | phrog_8884 | unknown function | unknown function | 1 | 44201 | 44371 |
| APL99339.1 | KY000220_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30246 | 30410 |
| APL99308.1 | KY000220_p9 | hypothetical protein | phrog_6364 | unknown function | unknown function | 1 | 9668 | 10528 |
| APL99371.1 | KY000220_p72 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 49708 | 50154 |
| APL99376.1 | KY000220_p77 | tail assembly protein | phrog_1196 | tail assembly chaperone | tail | 1 | 55790 | 55996 |
| APL99327.1 | KY000220_p28 | hypothetical protein | phrog_8203 | unknown function | unknown function | 1 | 24335 | 25513 |
| APL99310.1 | KY000220_p11 | threonine dehydratase | phrog_7093 | threonine dehydratase | other | 1 | 10752 | 11597 |
| APL99301.1 | KY000220_p2 | hypothetical protein | phrog_5888 | unknown function | unknown function | 1 | 2388 | 2750 |
| APL99319.1 | KY000220_p20 | DNA primase | phrog_8389 | unknown function | unknown function | 1 | 19496 | 19813 |
| APL99325.1 | KY000220_p26 | hypothetical protein | phrog_17845 | unknown function | unknown function | 1 | 23881 | 24099 |
| APL99338.1 | KY000220_p39 | diguanylate-cyclase GGDEF domain protein | phrog_5594 | unknown function | unknown function | 1 | 29692 | 30162 |
| APL99316.1 | KY000220_p17 | 5'-deoxynucleotidase | phrog_6047 | unknown function | unknown function | 1 | 16385 | 16966 |
| APL99358.1 | KY000220_p59 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 41767 | 42699 |
| APL99302.1 | KY000220_p3 | hypothetical protein | phrog_2378 | unknown function | unknown function | 1 | 2844 | 3371 |
| APL99356.1 | KY000220_p57 | minor structural protein | phrog_241 | head morphogenesis | head and packaging | 1 | 39540 | 40748 |
| APL99363.1 | KY000220_p64 | holin | phrog_8226 | holin | lysis | 1 | 44936 | 45283 |
| APL99344.1 | KY000220_p45 | hypothetical protein | phrog_23430 | unknown function | unknown function | 1 | 32798 | 33037 |
| APL99367.1 | KY000220_p68 | structural protein | phrog_179 | tail terminator | connector | 1 | 46884 | 47339 |
| APL99365.1 | KY000220_p66 | structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 45999 | 46517 |
| APL99355.1 | KY000220_p56 | hypothetical protein | phrog_9943 | unknown function | unknown function | 1 | 39443 | 39556 |
| APL99336.1 | KY000220_p37 | exonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28872 | 29417 |
| APL99324.1 | KY000220_p25 | hypothetical protein | phrog_2053 | unknown function | unknown function | 1 | 23614 | 23826 |
| APL99369.1 | KY000220_p70 | structural protein | phrog_313 | Tail assembly chaperone | tail | 1 | 48976 | 49434 |
| APL99362.1 | KY000220_p63 | Rz protein | phrog_1327 | Rz-like spanin | lysis | 1 | 44373 | 44939 |
| APL99312.1 | KY000220_p13 | nucleoside triphosphate hydrolase | phrog_800 | terminase small subunit | head and packaging | 1 | 13148 | 13714 |
| APL99342.1 | KY000220_p43 | hypothetical protein | phrog_18490 | unknown function | unknown function | 1 | 32269 | 32505 |
| APL99330.1 | KY000220_p31 | pyrophosphatase | phrog_9147 | unknown function | unknown function | 1 | 26137 | 26748 |
| APL99309.1 | KY000220_p10 | hypothetical protein | phrog_7696 | unknown function | unknown function | 1 | 10525 | 10755 |
| APL99357.1 | KY000220_p58 | virion structural protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 40812 | 41576 |
| APL99375.1 | KY000220_p76 | virion structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 55560 | 55793 |
| APL99372.1 | KY000220_p73 | tail length tape measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 50157 | 52973 |
| APL99345.1 | KY000220_p46 | hypothetical protein | phrog_11606 | unknown function | unknown function | 1 | 33024 | 33215 |
| APL99351.1 | KY000220_p52 | nucleotide pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 34508 | 35143 |
| APL99354.1 | KY000220_p55 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 37938 | 39446 |
| APL99311.1 | KY000220_p12 | DNA repair photolyase | phrog_9252 | DNA repair photolyase | DNA, RNA and nucleotide metabolism | 1 | 11668 | 13122 |
| APL99373.1 | KY000220_p74 | tail assembly structural protein | phrog_1082 | tail assembly protein | tail | 1 | 52960 | 54147 |
| APL99317.1 | KY000220_p18 | hypothetical protein | phrog_5839 | unknown function | unknown function | 1 | 17128 | 17517 |
| APL99300.1 | KY000220_p1 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 646 | 2391 |
| APL99326.1 | KY000220_p27 | hypothetical protein | phrog_8293 | unknown function | unknown function | 1 | 24104 | 24301 |
| APL99360.1 | KY000220_p61 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 43572 | 44165 |
| APL99337.1 | KY000220_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29477 | 29692 |
| APL99315.1 | KY000220_p16 | thymidylate synthase/deoxyuridylate hydroxymethyltransferase | phrog_5131 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 15328 | 16392 |
| APL99320.1 | KY000220_p21 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 19810 | 20472 |
| APL99328.1 | KY000220_p29 | hypothetical protein | phrog_9297 | unknown function | unknown function | 1 | 25510 | 25866 |
| APL99318.1 | KY000220_p19 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17517 | 19499 |
| APL99323.1 | KY000220_p24 | integrase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 21176 | 23602 |
| APL99370.1 | KY000220_p71 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 49458 | 49724 |
| APL99368.1 | KY000220_p69 | major tail tube protein | phrog_290 | minor tail protein | tail | 1 | 47380 | 48915 |
| APL99352.1 | KY000220_p53 | terminase small subunit | phrog_4044 | terminase small subunit | head and packaging | 1 | 35799 | 36311 |
| APL99313.1 | KY000220_p14 | hypothetical protein | phrog_2396 | unknown function | unknown function | 1 | 13714 | 14724 |
| APL99353.1 | KY000220_p54 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 36311 | 37879 |
| APL99349.1 | KY000220_p50 | hypothetical protein | phrog_30424 | unknown function | unknown function | 1 | 34096 | 34302 |
| APL99378.1 | KY000220_p79 | tail protein | phrog_10304 | virion structural protein | head and packaging | 1 | 58876 | 59484 |
| APL99346.1 | KY000220_p47 | hypothetical protein | phrog_6858 | unknown function | unknown function | 1 | 33217 | 33477 |
| APL99364.1 | KY000220_p65 | endolysin | phrog_669 | endolysin | lysis | 1 | 45268 | 46008 |
| APL99305.1 | KY000220_p6 | ribonucleotide-diphosphate reductase subunit alpha | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 5832 | 7526 |
| APL99379.1 | KY000220_p80 | F5/8 type C domain protein | phrog_10304 | virion structural protein | head and packaging | 1 | 59535 | 60170 |
| APL99332.1 | KY000220_p33 | hypothetical protein | phrog_9341 | unknown function | unknown function | 1 | 27232 | 27522 |
| APL99303.1 | KY000220_p4 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 3577 | 4407 |
| APL99348.1 | KY000220_p49 | hypothetical protein | phrog_18256 | unknown function | unknown function | 1 | 33893 | 34099 |
| APL99366.1 | KY000220_p67 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 46519 | 46887 |