| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY012363 |
Definition |
Mycobacterium phage Empress, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
NUCCORE |
Length |
57155 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
104 |
%GC |
61.51 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APC46640.1 | KY012363_p61 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 40703 | 41167 |
| APC46597.1 | KY012363_p15 | transposase DNA domain protein | phrog_506 | transposase | integration and excision | -1 | 13033 | 14253 |
| APC46627.1 | KY012363_p48 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36139 | 36429 |
| APC46614.1 | KY012363_p33 | holin | phrog_443 | holin | lysis | 1 | 29950 | 30183 |
| APC46646.1 | KY012363_p68 | DNA methylase | phrog_6650 | unknown function | unknown function | 1 | 44063 | 44758 |
| APC46637.1 | KY012363_p58 | HTH DNA-binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39956 | 40321 |
| APC46634.1 | KY012363_p55 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 38705 | 39202 |
| APC46585.1 | KY012363_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 571 | 2208 |
| APC46643.1 | KY012363_p65 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 43102 | 43287 |
| APC46644.1 | KY012363_p66 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 43265 | 43420 |
| APC46653.1 | KY012363_p75 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 47566 | 47826 |
| APC46641.1 | KY012363_p62 | RecA | phrog_1366 | unknown function | unknown function | 1 | 41164 | 42141 |
| APC46635.1 | KY012363_p56 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39199 | 39684 |
| APC46658.1 | KY012363_p81 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 49087 | 49257 |
| APC46686.1 | KY012363_p90 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 51280 | 51399 |
| APC46603.1 | KY012363_p21 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 23169 | 24332 |
| APC46660.1 | KY012363_p83 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 49521 | 49898 |
| APC46586.1 | KY012363_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2239 | 3609 |
| APC46671.1 | KY012363_p95 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52860 | 53024 |
| APC46656.1 | KY012363_p79 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 48345 | 48593 |
| APC46607.1 | KY012363_p25 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 25613 | 26437 |
| APC46631.1 | KY012363_p52 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 37322 | 38011 |
| APC46642.1 | KY012363_p63 | hypothetical protein | phrog_4657 | unknown function | unknown function | 1 | 42138 | 42746 |
| APC46598.1 | KY012363_p16 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14363 | 16072 |
| APC46667.1 | KY012363_p91 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 51396 | 51632 |
| APC46639.1 | KY012363_p60 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40473 | 40706 |
| APC46602.1 | KY012363_p20 | D-ala D-ala carboypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 21283 | 23172 |
| APC46587.1 | KY012363_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3596 | 4351 |
| APC46596.1 | KY012363_p14 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9508 | 13032 |
| APC46657.1 | KY012363_p80 | hypothetical protein | phrog_14412 | unknown function | unknown function | 1 | 48590 | 49090 |
| APC46632.1 | KY012363_p53 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 38086 | 38364 |
| APC46633.1 | KY012363_p54 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38361 | 38708 |
| APC46679.1 | KY012363_p103 | hypothetitcal protein | phrog_1693 | unknown function | unknown function | 1 | 55860 | 56066 |
| APC46680.1 | KY012363_p104 | N-acetylglucosaminyl transferace | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56063 | 56686 |
| APC46617.1 | KY012363_p36 | DNA Q-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 30798 | 31619 |
| APC46595.1 | KY012363_p12 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8553 | 9104 |
| APC46609.1 | KY012363_p28 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 27085 | 27234 |
| APC46628.1 | KY012363_p49 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36516 | 36713 |
| APC46616.1 | KY012363_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 30551 | 30811 |
| APC46591.1 | KY012363_p8 | head-to-tail-connector protein | phrog_763 | head-tail adaptor | connector | 1 | 6443 | 6772 |
| APC46618.1 | KY012363_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 31635 | 31925 |
| APC46659.1 | KY012363_p82 | hypothetical protein | phrog_3381 | unknown function | unknown function | 1 | 49301 | 49519 |
| APC46652.1 | KY012363_p74 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46718 | 47569 |
| APC46584.1 | KY012363_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 108 | 563 |
| APC46621.1 | KY012363_p40 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 32182 | 32331 |
| APC46594.1 | KY012363_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7533 | 8417 |
| APC46676.1 | KY012363_p100 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 54008 | 54169 |
| APC46604.1 | KY012363_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24346 | 24687 |
| APC46647.1 | KY012363_p69 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | 1 | 44809 | 45546 |
| APC46613.1 | KY012363_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 28933 | 29934 |
| APC46636.1 | KY012363_p57 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39681 | 39959 |
| APC46601.1 | KY012363_p19 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 18749 | 21286 |
| APC46664.1 | KY012363_p87 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50476 | 50655 |
| APC46682.1 | KY012363_p77 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 48026 | 48220 |
| APC46687.1 | KY012363_p13 | tail assembly chaperone | phrog_15976 | tail assembly chaperone | tail | 1 | 9055 | 9489 |
| APC46619.1 | KY012363_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 31915 | 32010 |
| APC46615.1 | KY012363_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 30180 | 30554 |
| APC46588.1 | KY012363_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4378 | 5028 |
| APC46625.1 | KY012363_p46 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 35106 | 35678 |
| APC46666.1 | KY012363_p89 | hypothetical protein | phrog_8093 | unknown function | unknown function | 1 | 51104 | 51283 |
| APC46638.1 | KY012363_p59 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40318 | 40473 |
| APC46606.1 | KY012363_p24 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 24978 | 25616 |
| APC46674.1 | KY012363_p98 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 53375 | 53776 |
| APC46623.1 | KY012363_p43 | integrase | phrog_1 | integrase | integration and excision | 1 | 33009 | 34310 |
| APC46665.1 | KY012363_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50655 | 51107 |
| APC46648.1 | KY012363_p70 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 45572 | 45694 |
| APC46608.1 | KY012363_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 26782 | 27078 |
| APC46662.1 | KY012363_p85 | hypothetical protein | phrog_6727 | unknown function | unknown function | 1 | 50103 | 50291 |
| APC46600.1 | KY012363_p18 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 17907 | 18752 |
| APC46611.1 | KY012363_p30 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 27432 | 27665 |
| APC46599.1 | KY012363_p17 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16157 | 17866 |
| APC46593.1 | KY012363_p10 | head-to-tail-connector protein | phrog_813 | head-tail adaptor | connector | 1 | 7095 | 7499 |
| APC46673.1 | KY012363_p97 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 53211 | 53378 |
| APC46645.1 | KY012363_p67 | hypothetical protein | phrog_2259 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 43413 | 44066 |
| APC46678.1 | KY012363_p102 | hypothetical protein | phrog_26719 | unknown function | unknown function | 1 | 55642 | 55857 |
| APC46605.1 | KY012363_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 24710 | 24964 |
| APC46685.1 | KY012363_p42 | hypothetical protein | phrog_22547 | unknown function | unknown function | 1 | 32639 | 32827 |
| APC46629.1 | KY012363_p50 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 36757 | 37140 |
| APC46590.1 | KY012363_p7 | head-to-tail-connector protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5877 | 6446 |
| APC46649.1 | KY012363_p71 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 45691 | 45918 |
| APC46681.1 | KY012363_p26 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 26441 | 26632 |
| APC46630.1 | KY012363_p51 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37137 | 37325 |
| APC46589.1 | KY012363_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5047 | 5868 |
| APC46684.1 | KY012363_p45 | hypothetical protein | phrog_7613 | unknown function | unknown function | -1 | 34957 | 35103 |
| APC46668.1 | KY012363_p92 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 51625 | 51891 |
| APC46675.1 | KY012363_p99 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53773 | 54015 |
| APC46669.1 | KY012363_p93 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51888 | 52529 |
| APC46661.1 | KY012363_p84 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 49895 | 50110 |
| APC46655.1 | KY012363_p78 | hypothetical protein | phrog_9840 | unknown function | unknown function | 1 | 48217 | 48348 |
| APC46610.1 | KY012363_p29 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 27231 | 27365 |
| APC46670.1 | KY012363_p94 | HTH DNA-binding protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 52639 | 52863 |
| APC46672.1 | KY012363_p96 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 53031 | 53189 |
| APC46626.1 | KY012363_p47 | HTH DNA-binding protein | phrog_2104 | unknown function | unknown function | 1 | 35720 | 36079 |
| APC46677.1 | KY012363_p101 | galactosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54196 | 55632 |
| APC46651.1 | KY012363_p73 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 46580 | 46714 |
| APC46654.1 | KY012363_p76 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 47823 | 48029 |
| APC46622.1 | KY012363_p41 | DNA-binding protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 32383 | 32577 |
| APC46612.1 | KY012363_p31 | lysin A | phrog_700 | endolysin | lysis | 1 | 27662 | 28933 |
| APC46650.1 | KY012363_p72 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 45915 | 46583 |
| APC46624.1 | KY012363_p44 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34388 | 34843 |
| APC46663.1 | KY012363_p86 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 50288 | 50479 |
| APC46683.1 | KY012363_p64 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42743 | 43105 |
| APC46620.1 | KY012363_p39 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 32048 | 32182 |
| APC46592.1 | KY012363_p9 | head-to-tail-connector protein | phrog_1929 | head-tail connector protein | connector | 1 | 6779 | 7105 |