Genomic map of Vibrio phage JSF3 (KY065148)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY065148
Definition
Vibrio phage JSF3, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
69396
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
112
%GC
34.57
Number of singletons
11
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APD18024.1 KY065148_p12 hypothetical protein phrog_29404 unknown function unknown function -1 2786 2962
APD18084.1 KY065148_p72 hypothetical protein phrog_11852 unknown function unknown function -1 54988 55314
APD18106.1 KY065148_p94 RNA polymerase phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism -1 61484 62710
APD18071.1 KY065148_p59 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism -1 46054 47283
APD18068.1 KY065148_p56 hypothetical protein phrog_37832 unknown function unknown function -1 45502 45681
APD18122.1 KY065148_p110 chromosome segregation protein phrog_289 GTP-binding domain other -1 67416 67826
APD18062.1 KY065148_p50 DNA polymerase I phrog_2573 DNA polymerase DNA, RNA and nucleotide metabolism -1 40126 41124
APD18051.1 KY065148_p39 hypothetical protein phrog_32596 unknown function unknown function -1 31900 32097
APD18020.1 KY065148_p8 hypothetical protein phrog_37863 unknown function unknown function -1 1951 2091
APD18032.1 KY065148_p20 hypothetical protein phrog_11073 unknown function unknown function -1 4507 4641
APD18049.1 KY065148_p37 ribonuclease E phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism 1 22556 31624
APD18103.1 KY065148_p91 hypothetical protein phrog_23967 unknown function unknown function -1 60869 61081
APD18077.1 KY065148_p65 hypothetical protein phrog_19808 unknown function unknown function -1 51099 51740
APD18123.1 KY065148_p111 hypothetical protein singleton unknown function unknown function -1 67858 68031
APD18019.1 KY065148_p7 hypothetical protein phrog_37787 unknown function unknown function -1 1824 1964
APD18056.1 KY065148_p44 DNA primase phrog_2135 DNA primase DNA, RNA and nucleotide metabolism -1 34710 36632
APD18097.1 KY065148_p85 hypothetical protein phrog_25910 unknown function unknown function -1 59631 59876
APD18053.1 KY065148_p41 hypothetical protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 32894 33616
APD18109.1 KY065148_p97 hypothetical protein singleton unknown function unknown function -1 64003 64119
APD18045.1 KY065148_p33 hypothetical protein phrog_2050 virion structural protein head and packaging 1 18261 18737
APD18022.1 KY065148_p10 hypothetical protein phrog_28847 unknown function unknown function -1 2416 2547
APD18069.1 KY065148_p57 hypothetical protein singleton unknown function unknown function -1 45668 45838
APD18047.1 KY065148_p35 hypothetical protein phrog_2646 unknown function unknown function 1 20878 21285
APD18043.1 KY065148_p31 hypothetical protein phrog_1357 major head protein head and packaging 1 16304 17617
APD18041.1 KY065148_p29 hypothetical protein phrog_21748 unknown function unknown function 1 14885 15196
APD18092.1 KY065148_p80 hypothetical protein phrog_14729 unknown function unknown function -1 58032 58346
APD18110.1 KY065148_p98 hypothetical protein phrog_17814 unknown function unknown function -1 64171 64410
APD18013.1 KY065148_p1 hypothetical protein phrog_21584 unknown function unknown function 1 53 451
APD18050.1 KY065148_p38 hypothetical protein phrog_38220 unknown function unknown function -1 31666 31869
APD18072.1 KY065148_p60 hypothetical protein phrog_1297 ATPase other -1 47340 48023
APD18059.1 KY065148_p47 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism -1 37930 38943
APD18042.1 KY065148_p30 hypothetical protein phrog_2120 tail length tape measure protein tail 1 15200 16291
APD18033.1 KY065148_p21 hypothetical protein phrog_25798 unknown function unknown function -1 4642 4830
APD18116.1 KY065148_p104 hypothetical protein singleton unknown function unknown function -1 65686 65895
APD18094.1 KY065148_p82 hypothetical protein phrog_18917 unknown function unknown function -1 58556 58852
APD18027.1 KY065148_p15 hypothetical protein phrog_21733 unknown function unknown function -1 3382 3573
APD18023.1 KY065148_p11 hypothetical protein phrog_25913 unknown function unknown function -1 2658 2789
APD18065.1 KY065148_p53 hypothetical protein phrog_16775 unknown function unknown function -1 43715 44164
APD18113.1 KY065148_p101 hypothetical protein phrog_18082 unknown function unknown function -1 64979 65212
APD18046.1 KY065148_p34 hypothetical protein phrog_2220 unknown function unknown function 1 18760 20868
APD18029.1 KY065148_p17 hypothetical protein phrog_26832 unknown function unknown function -1 3874 4047
APD18090.1 KY065148_p78 hypothetical protein phrog_21339 lipoprotein other -1 57304 57606
APD18108.1 KY065148_p96 RNA polymerase phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism -1 62944 63885
APD18025.1 KY065148_p13 hypothetical protein phrog_37582 unknown function unknown function -1 3045 3203
APD18081.1 KY065148_p69 hypothetical protein phrog_21935 unknown function unknown function -1 52731 52871
APD18057.1 KY065148_p45 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 36726 37361
APD18066.1 KY065148_p54 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism -1 44166 45326
APD18102.1 KY065148_p90 hypothetical protein singleton unknown function unknown function -1 60718 60897
APD18058.1 KY065148_p46 hypothetical protein phrog_27540 unknown function unknown function -1 37680 37922
APD18026.1 KY065148_p14 hypothetical protein phrog_21771 unknown function unknown function -1 3270 3395
APD18089.1 KY065148_p77 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 56456 57307
APD18117.1 KY065148_p105 hypothetical protein phrog_30558 unknown function unknown function -1 66006 66143
APD18075.1 KY065148_p63 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 49165 49740
APD18028.1 KY065148_p16 hypothetical protein phrog_23512 unknown function unknown function -1 3671 3877
APD18073.1 KY065148_p61 hypothetical protein phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism -1 48251 48637
APD18067.1 KY065148_p55 hypothetical protein singleton unknown function unknown function -1 45323 45505
APD18114.1 KY065148_p102 hypothetical protein phrog_21563 unknown function unknown function -1 65326 65514
APD18054.1 KY065148_p42 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 33678 34415
APD18060.1 KY065148_p48 nucleoside triphosphate pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other -1 38943 39392
APD18034.1 KY065148_p22 hypothetical protein phrog_2109 unknown function unknown function 1 4881 5558
APD18093.1 KY065148_p81 hypothetical protein phrog_29791 unknown function unknown function -1 58348 58554
APD18121.1 KY065148_p109 hypothetical protein phrog_35822 unknown function unknown function -1 67102 67329
APD18036.1 KY065148_p24 hypothetical protein phrog_2125 virion structural protein head and packaging 1 8171 8857
APD18082.1 KY065148_p70 hypothetical protein phrog_18142 unknown function unknown function -1 53184 53582
APD18016.1 KY065148_p4 hypothetical protein phrog_22423 unknown function unknown function -1 972 1193
APD18080.1 KY065148_p68 hypothetical protein phrog_18469 unknown function unknown function -1 52229 52684
APD18039.1 KY065148_p27 hypothetical protein phrog_18138 unknown function unknown function -1 12411 12698
APD18095.1 KY065148_p83 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 58876 59400
APD18124.1 KY065148_p112 hypothetical protein phrog_21645 unknown function unknown function -1 68133 68345
APD18119.1 KY065148_p107 hypothetical protein phrog_2978 unknown function unknown function -1 66417 66695
APD18079.1 KY065148_p67 hypothetical protein phrog_236 nucleotide kinase other -1 51939 52232
APD18078.1 KY065148_p66 hypothetical protein phrog_20360 unknown function unknown function -1 51754 51936
APD18052.1 KY065148_p40 hypothetical protein phrog_21721 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 32097 32894
APD18018.1 KY065148_p6 hypothetical protein phrog_10915 unknown function unknown function -1 1603 1842
APD18070.1 KY065148_p58 hypothetical protein phrog_22607 unknown function unknown function -1 45835 46002
APD18088.1 KY065148_p76 hypothetical protein phrog_26869 unknown function unknown function -1 56270 56446
APD18037.1 KY065148_p25 PE_PGRS family protein phrog_22896 tail protein tail 1 8854 11280
APD18064.1 KY065148_p52 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 41921 43600
APD18038.1 KY065148_p26 hypothetical protein phrog_15833 DNA polymerase DNA, RNA and nucleotide metabolism -1 11305 11928
APD18061.1 KY065148_p49 hypothetical protein phrog_1965 unknown function unknown function -1 39442 40050
APD18115.1 KY065148_p103 hypothetical protein phrog_26780 unknown function unknown function -1 65501 65689
APD18014.1 KY065148_p2 hypothetical protein singleton unknown function unknown function -1 448 648
APD18096.1 KY065148_p84 hypothetical protein phrog_17135 unknown function unknown function -1 59386 59658
APD18086.1 KY065148_p74 hypothetical protein phrog_9685 unknown function unknown function -1 55843 56043
APD18031.1 KY065148_p19 hypothetical protein phrog_11073 unknown function unknown function -1 4253 4396
APD18091.1 KY065148_p79 hypothetical protein phrog_18330 unknown function unknown function -1 57603 58022
APD18101.1 KY065148_p89 hypothetical protein phrog_20578 unknown function unknown function -1 60543 60731
APD18063.1 KY065148_p51 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 41243 41776
APD18104.1 KY065148_p92 hypothetical protein phrog_23967 unknown function unknown function -1 61082 61261
APD18087.1 KY065148_p75 hypothetical protein phrog_19571 unknown function unknown function -1 56102 56260
APD18099.1 KY065148_p87 hypothetical protein singleton unknown function unknown function -1 60187 60327
APD18040.1 KY065148_p28 portal protein phrog_1216 portal protein head and packaging 1 12768 14885
APD18055.1 KY065148_p43 hypothetical protein phrog_14094 unknown function unknown function -1 34419 34706
APD18017.1 KY065148_p5 hypothetical protein phrog_10915 unknown function unknown function -1 1391 1612
APD18076.1 KY065148_p64 hypothetical protein phrog_6596 unknown function unknown function -1 50583 51038
APD18111.1 KY065148_p99 hypothetical protein phrog_17814 unknown function unknown function -1 64415 64654
APD18048.1 KY065148_p36 nucleoporin phrog_17660 unknown function unknown function 1 21288 22556
APD18035.1 KY065148_p23 hypothetical protein phrog_38 terminase large subunit head and packaging 1 5551 8163
APD18044.1 KY065148_p32 hypothetical protein phrog_2130 unknown function unknown function 1 17674 18258
APD18030.1 KY065148_p18 hypothetical protein phrog_35507 unknown function unknown function -1 4138 4272
APD18105.1 KY065148_p93 hypothetical protein singleton unknown function unknown function -1 61318 61476
APD18015.1 KY065148_p3 hypothetical protein phrog_27835 unknown function unknown function -1 649 762
APD18112.1 KY065148_p100 hypothetical protein phrog_21216 unknown function unknown function -1 64657 64923
APD18083.1 KY065148_p71 hypothetical protein phrog_21764 unknown function unknown function -1 53662 53973
APD18074.1 KY065148_p62 hypothetical protein phrog_16335 ATPase other -1 48764 49084
APD18085.1 KY065148_p73 hypothetical protein phrog_21600 unknown function unknown function -1 55621 55836
APD18107.1 KY065148_p95 hypothetical protein phrog_19932 unknown function unknown function -1 62729 62944
APD18021.1 KY065148_p9 hypothetical protein singleton unknown function unknown function -1 2297 2419
APD18098.1 KY065148_p86 hypothetical protein singleton unknown function unknown function -1 59863 60054
APD18118.1 KY065148_p106 hypothetical protein phrog_21816 unknown function unknown function -1 66169 66405
APD18120.1 KY065148_p108 hypothetical protein phrog_33864 unknown function unknown function -1 66834 67040
APD18100.1 KY065148_p88 hypothetical protein phrog_30259 unknown function unknown function -1 60332 60529