| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY065148 |
Definition |
Vibrio phage JSF3, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
69396 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
112 |
%GC |
34.57 |
Number of singletons |
11 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD18024.1 | KY065148_p12 | hypothetical protein | phrog_29404 | unknown function | unknown function | -1 | 2786 | 2962 |
| APD18084.1 | KY065148_p72 | hypothetical protein | phrog_11852 | unknown function | unknown function | -1 | 54988 | 55314 |
| APD18106.1 | KY065148_p94 | RNA polymerase | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 61484 | 62710 |
| APD18071.1 | KY065148_p59 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46054 | 47283 |
| APD18068.1 | KY065148_p56 | hypothetical protein | phrog_37832 | unknown function | unknown function | -1 | 45502 | 45681 |
| APD18122.1 | KY065148_p110 | chromosome segregation protein | phrog_289 | GTP-binding domain | other | -1 | 67416 | 67826 |
| APD18062.1 | KY065148_p50 | DNA polymerase I | phrog_2573 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 40126 | 41124 |
| APD18051.1 | KY065148_p39 | hypothetical protein | phrog_32596 | unknown function | unknown function | -1 | 31900 | 32097 |
| APD18020.1 | KY065148_p8 | hypothetical protein | phrog_37863 | unknown function | unknown function | -1 | 1951 | 2091 |
| APD18032.1 | KY065148_p20 | hypothetical protein | phrog_11073 | unknown function | unknown function | -1 | 4507 | 4641 |
| APD18049.1 | KY065148_p37 | ribonuclease E | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 22556 | 31624 |
| APD18103.1 | KY065148_p91 | hypothetical protein | phrog_23967 | unknown function | unknown function | -1 | 60869 | 61081 |
| APD18077.1 | KY065148_p65 | hypothetical protein | phrog_19808 | unknown function | unknown function | -1 | 51099 | 51740 |
| APD18123.1 | KY065148_p111 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67858 | 68031 |
| APD18019.1 | KY065148_p7 | hypothetical protein | phrog_37787 | unknown function | unknown function | -1 | 1824 | 1964 |
| APD18056.1 | KY065148_p44 | DNA primase | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 34710 | 36632 |
| APD18097.1 | KY065148_p85 | hypothetical protein | phrog_25910 | unknown function | unknown function | -1 | 59631 | 59876 |
| APD18053.1 | KY065148_p41 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32894 | 33616 |
| APD18109.1 | KY065148_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 64003 | 64119 |
| APD18045.1 | KY065148_p33 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | 1 | 18261 | 18737 |
| APD18022.1 | KY065148_p10 | hypothetical protein | phrog_28847 | unknown function | unknown function | -1 | 2416 | 2547 |
| APD18069.1 | KY065148_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45668 | 45838 |
| APD18047.1 | KY065148_p35 | hypothetical protein | phrog_2646 | unknown function | unknown function | 1 | 20878 | 21285 |
| APD18043.1 | KY065148_p31 | hypothetical protein | phrog_1357 | major head protein | head and packaging | 1 | 16304 | 17617 |
| APD18041.1 | KY065148_p29 | hypothetical protein | phrog_21748 | unknown function | unknown function | 1 | 14885 | 15196 |
| APD18092.1 | KY065148_p80 | hypothetical protein | phrog_14729 | unknown function | unknown function | -1 | 58032 | 58346 |
| APD18110.1 | KY065148_p98 | hypothetical protein | phrog_17814 | unknown function | unknown function | -1 | 64171 | 64410 |
| APD18013.1 | KY065148_p1 | hypothetical protein | phrog_21584 | unknown function | unknown function | 1 | 53 | 451 |
| APD18050.1 | KY065148_p38 | hypothetical protein | phrog_38220 | unknown function | unknown function | -1 | 31666 | 31869 |
| APD18072.1 | KY065148_p60 | hypothetical protein | phrog_1297 | ATPase | other | -1 | 47340 | 48023 |
| APD18059.1 | KY065148_p47 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 37930 | 38943 |
| APD18042.1 | KY065148_p30 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | 1 | 15200 | 16291 |
| APD18033.1 | KY065148_p21 | hypothetical protein | phrog_25798 | unknown function | unknown function | -1 | 4642 | 4830 |
| APD18116.1 | KY065148_p104 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65686 | 65895 |
| APD18094.1 | KY065148_p82 | hypothetical protein | phrog_18917 | unknown function | unknown function | -1 | 58556 | 58852 |
| APD18027.1 | KY065148_p15 | hypothetical protein | phrog_21733 | unknown function | unknown function | -1 | 3382 | 3573 |
| APD18023.1 | KY065148_p11 | hypothetical protein | phrog_25913 | unknown function | unknown function | -1 | 2658 | 2789 |
| APD18065.1 | KY065148_p53 | hypothetical protein | phrog_16775 | unknown function | unknown function | -1 | 43715 | 44164 |
| APD18113.1 | KY065148_p101 | hypothetical protein | phrog_18082 | unknown function | unknown function | -1 | 64979 | 65212 |
| APD18046.1 | KY065148_p34 | hypothetical protein | phrog_2220 | unknown function | unknown function | 1 | 18760 | 20868 |
| APD18029.1 | KY065148_p17 | hypothetical protein | phrog_26832 | unknown function | unknown function | -1 | 3874 | 4047 |
| APD18090.1 | KY065148_p78 | hypothetical protein | phrog_21339 | lipoprotein | other | -1 | 57304 | 57606 |
| APD18108.1 | KY065148_p96 | RNA polymerase | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 62944 | 63885 |
| APD18025.1 | KY065148_p13 | hypothetical protein | phrog_37582 | unknown function | unknown function | -1 | 3045 | 3203 |
| APD18081.1 | KY065148_p69 | hypothetical protein | phrog_21935 | unknown function | unknown function | -1 | 52731 | 52871 |
| APD18057.1 | KY065148_p45 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 36726 | 37361 |
| APD18066.1 | KY065148_p54 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | -1 | 44166 | 45326 |
| APD18102.1 | KY065148_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60718 | 60897 |
| APD18058.1 | KY065148_p46 | hypothetical protein | phrog_27540 | unknown function | unknown function | -1 | 37680 | 37922 |
| APD18026.1 | KY065148_p14 | hypothetical protein | phrog_21771 | unknown function | unknown function | -1 | 3270 | 3395 |
| APD18089.1 | KY065148_p77 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 56456 | 57307 |
| APD18117.1 | KY065148_p105 | hypothetical protein | phrog_30558 | unknown function | unknown function | -1 | 66006 | 66143 |
| APD18075.1 | KY065148_p63 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 49165 | 49740 |
| APD18028.1 | KY065148_p16 | hypothetical protein | phrog_23512 | unknown function | unknown function | -1 | 3671 | 3877 |
| APD18073.1 | KY065148_p61 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 48251 | 48637 |
| APD18067.1 | KY065148_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45323 | 45505 |
| APD18114.1 | KY065148_p102 | hypothetical protein | phrog_21563 | unknown function | unknown function | -1 | 65326 | 65514 |
| APD18054.1 | KY065148_p42 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 33678 | 34415 |
| APD18060.1 | KY065148_p48 | nucleoside triphosphate pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 38943 | 39392 |
| APD18034.1 | KY065148_p22 | hypothetical protein | phrog_2109 | unknown function | unknown function | 1 | 4881 | 5558 |
| APD18093.1 | KY065148_p81 | hypothetical protein | phrog_29791 | unknown function | unknown function | -1 | 58348 | 58554 |
| APD18121.1 | KY065148_p109 | hypothetical protein | phrog_35822 | unknown function | unknown function | -1 | 67102 | 67329 |
| APD18036.1 | KY065148_p24 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | 1 | 8171 | 8857 |
| APD18082.1 | KY065148_p70 | hypothetical protein | phrog_18142 | unknown function | unknown function | -1 | 53184 | 53582 |
| APD18016.1 | KY065148_p4 | hypothetical protein | phrog_22423 | unknown function | unknown function | -1 | 972 | 1193 |
| APD18080.1 | KY065148_p68 | hypothetical protein | phrog_18469 | unknown function | unknown function | -1 | 52229 | 52684 |
| APD18039.1 | KY065148_p27 | hypothetical protein | phrog_18138 | unknown function | unknown function | -1 | 12411 | 12698 |
| APD18095.1 | KY065148_p83 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 58876 | 59400 |
| APD18124.1 | KY065148_p112 | hypothetical protein | phrog_21645 | unknown function | unknown function | -1 | 68133 | 68345 |
| APD18119.1 | KY065148_p107 | hypothetical protein | phrog_2978 | unknown function | unknown function | -1 | 66417 | 66695 |
| APD18079.1 | KY065148_p67 | hypothetical protein | phrog_236 | nucleotide kinase | other | -1 | 51939 | 52232 |
| APD18078.1 | KY065148_p66 | hypothetical protein | phrog_20360 | unknown function | unknown function | -1 | 51754 | 51936 |
| APD18052.1 | KY065148_p40 | hypothetical protein | phrog_21721 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 32097 | 32894 |
| APD18018.1 | KY065148_p6 | hypothetical protein | phrog_10915 | unknown function | unknown function | -1 | 1603 | 1842 |
| APD18070.1 | KY065148_p58 | hypothetical protein | phrog_22607 | unknown function | unknown function | -1 | 45835 | 46002 |
| APD18088.1 | KY065148_p76 | hypothetical protein | phrog_26869 | unknown function | unknown function | -1 | 56270 | 56446 |
| APD18037.1 | KY065148_p25 | PE_PGRS family protein | phrog_22896 | tail protein | tail | 1 | 8854 | 11280 |
| APD18064.1 | KY065148_p52 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 41921 | 43600 |
| APD18038.1 | KY065148_p26 | hypothetical protein | phrog_15833 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 11305 | 11928 |
| APD18061.1 | KY065148_p49 | hypothetical protein | phrog_1965 | unknown function | unknown function | -1 | 39442 | 40050 |
| APD18115.1 | KY065148_p103 | hypothetical protein | phrog_26780 | unknown function | unknown function | -1 | 65501 | 65689 |
| APD18014.1 | KY065148_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 448 | 648 |
| APD18096.1 | KY065148_p84 | hypothetical protein | phrog_17135 | unknown function | unknown function | -1 | 59386 | 59658 |
| APD18086.1 | KY065148_p74 | hypothetical protein | phrog_9685 | unknown function | unknown function | -1 | 55843 | 56043 |
| APD18031.1 | KY065148_p19 | hypothetical protein | phrog_11073 | unknown function | unknown function | -1 | 4253 | 4396 |
| APD18091.1 | KY065148_p79 | hypothetical protein | phrog_18330 | unknown function | unknown function | -1 | 57603 | 58022 |
| APD18101.1 | KY065148_p89 | hypothetical protein | phrog_20578 | unknown function | unknown function | -1 | 60543 | 60731 |
| APD18063.1 | KY065148_p51 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 41243 | 41776 |
| APD18104.1 | KY065148_p92 | hypothetical protein | phrog_23967 | unknown function | unknown function | -1 | 61082 | 61261 |
| APD18087.1 | KY065148_p75 | hypothetical protein | phrog_19571 | unknown function | unknown function | -1 | 56102 | 56260 |
| APD18099.1 | KY065148_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60187 | 60327 |
| APD18040.1 | KY065148_p28 | portal protein | phrog_1216 | portal protein | head and packaging | 1 | 12768 | 14885 |
| APD18055.1 | KY065148_p43 | hypothetical protein | phrog_14094 | unknown function | unknown function | -1 | 34419 | 34706 |
| APD18017.1 | KY065148_p5 | hypothetical protein | phrog_10915 | unknown function | unknown function | -1 | 1391 | 1612 |
| APD18076.1 | KY065148_p64 | hypothetical protein | phrog_6596 | unknown function | unknown function | -1 | 50583 | 51038 |
| APD18111.1 | KY065148_p99 | hypothetical protein | phrog_17814 | unknown function | unknown function | -1 | 64415 | 64654 |
| APD18048.1 | KY065148_p36 | nucleoporin | phrog_17660 | unknown function | unknown function | 1 | 21288 | 22556 |
| APD18035.1 | KY065148_p23 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 5551 | 8163 |
| APD18044.1 | KY065148_p32 | hypothetical protein | phrog_2130 | unknown function | unknown function | 1 | 17674 | 18258 |
| APD18030.1 | KY065148_p18 | hypothetical protein | phrog_35507 | unknown function | unknown function | -1 | 4138 | 4272 |
| APD18105.1 | KY065148_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 61318 | 61476 |
| APD18015.1 | KY065148_p3 | hypothetical protein | phrog_27835 | unknown function | unknown function | -1 | 649 | 762 |
| APD18112.1 | KY065148_p100 | hypothetical protein | phrog_21216 | unknown function | unknown function | -1 | 64657 | 64923 |
| APD18083.1 | KY065148_p71 | hypothetical protein | phrog_21764 | unknown function | unknown function | -1 | 53662 | 53973 |
| APD18074.1 | KY065148_p62 | hypothetical protein | phrog_16335 | ATPase | other | -1 | 48764 | 49084 |
| APD18085.1 | KY065148_p73 | hypothetical protein | phrog_21600 | unknown function | unknown function | -1 | 55621 | 55836 |
| APD18107.1 | KY065148_p95 | hypothetical protein | phrog_19932 | unknown function | unknown function | -1 | 62729 | 62944 |
| APD18021.1 | KY065148_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2297 | 2419 |
| APD18098.1 | KY065148_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59863 | 60054 |
| APD18118.1 | KY065148_p106 | hypothetical protein | phrog_21816 | unknown function | unknown function | -1 | 66169 | 66405 |
| APD18120.1 | KY065148_p108 | hypothetical protein | phrog_33864 | unknown function | unknown function | -1 | 66834 | 67040 |
| APD18100.1 | KY065148_p88 | hypothetical protein | phrog_30259 | unknown function | unknown function | -1 | 60332 | 60529 |