| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY065478 |
Definition |
Streptococcus phage IPP38, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
40403 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
63 |
%GC |
39.97 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD23100.1 | KY065478_p8 | DNA-binding protein | phrog_7950 | transcriptional repressor | transcription regulation | 1 | 4619 | 4780 |
| APD23113.1 | KY065478_p21 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 8398 | 8880 |
| APD23110.1 | KY065478_p18 | hypothetical protein | phrog_633 | transcriptional regulator | transcription regulation | 1 | 7097 | 7438 |
| APD23099.1 | KY065478_p7 | hypothetical protein | phrog_6248 | unknown function | unknown function | 1 | 4436 | 4600 |
| APD23103.1 | KY065478_p11 | hypothetical protein | phrog_7728 | unknown function | unknown function | -1 | 5464 | 5655 |
| APD23140.1 | KY065478_p48 | hypothetical protein | phrog_933 | unknown function | unknown function | 1 | 25663 | 25851 |
| APD23138.1 | KY065478_p46 | hypothetical protein | phrog_544 | major head protein | head and packaging | 1 | 24634 | 25479 |
| APD23134.1 | KY065478_p42 | head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 21948 | 23297 |
| APD23154.1 | KY065478_p62 | LL-H family holin | phrog_608 | holin | lysis | 1 | 39111 | 39443 |
| APD23155.1 | KY065478_p63 | lytic amidase | phrog_1110 | endolysin | lysis | 1 | 39447 | 40403 |
| APD23133.1 | KY065478_p41 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 20516 | 21985 |
| APD23108.1 | KY065478_p16 | hypothetical protein | phrog_2648 | unknown function | unknown function | 1 | 6703 | 6918 |
| APD23145.1 | KY065478_p53 | major tail protein | phrog_158 | major tail protein | tail | 1 | 27341 | 27754 |
| APD23141.1 | KY065478_p49 | head-tail connector protein | phrog_132 | head-tail adaptor | connector | 1 | 25853 | 26164 |
| APD23097.1 | KY065478_p5 | hypothetical protein | phrog_1305 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 3540 | 4229 |
| APD23121.1 | KY065478_p29 | hypothetical protein | phrog_1313 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 13565 | 14908 |
| APD23095.1 | KY065478_p3 | CI-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2505 | 3296 |
| APD23106.1 | KY065478_p14 | hypothetical protein | phrog_3240 | unknown function | unknown function | -1 | 6077 | 6316 |
| APD23137.1 | KY065478_p45 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 24043 | 24627 |
| APD23148.1 | KY065478_p56 | TMP repeat family protein | phrog_1535 | tail length tape measure protein | tail | 1 | 28515 | 32168 |
| APD23150.1 | KY065478_p58 | hyaluronidase | phrog_1210 | PblB-type receptor binding | other | 1 | 32532 | 38147 |
| APD23112.1 | KY065478_p20 | hypothetical protein | phrog_1891 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7641 | 8405 |
| APD23125.1 | KY065478_p33 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 16206 | 16466 |
| APD23094.1 | KY065478_p2 | abortive infection resistance protein | phrog_2158 | abortive infection resistance protein | moron, auxiliary metabolic gene and host takeover | -1 | 1407 | 2357 |
| APD23114.1 | KY065478_p22 | hypothetical protein | phrog_1341 | unknown function | unknown function | 1 | 8880 | 9239 |
| APD23109.1 | KY065478_p17 | hypothetical protein | phrog_5054 | unknown function | unknown function | 1 | 6897 | 7085 |
| APD23139.1 | KY065478_p47 | hypothetical protein | phrog_2250 | unknown function | unknown function | 1 | 25491 | 25673 |
| APD23111.1 | KY065478_p19 | hypothetical protein | phrog_2044 | RNA polymerase beta subunit | DNA, RNA and nucleotide metabolism | 1 | 7439 | 7669 |
| APD23093.1 | KY065478_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 1 | 1128 |
| APD23117.1 | KY065478_p25 | hypothetical protein | phrog_2486 | unknown function | unknown function | 1 | 10898 | 11215 |
| APD23127.1 | KY065478_p35 | DNA-binding protein | phrog_14932 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 16933 | 17040 |
| APD23126.1 | KY065478_p34 | hypothetical protein | phrog_9057 | unknown function | unknown function | 1 | 16466 | 16924 |
| APD23122.1 | KY065478_p30 | hypothetical protein | phrog_1489 | unknown function | unknown function | 1 | 15201 | 15356 |
| APD23136.1 | KY065478_p44 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 23661 | 23873 |
| APD23149.1 | KY065478_p57 | hypothetical protein | phrog_1194 | unknown function | unknown function | 1 | 32177 | 32527 |
| APD23124.1 | KY065478_p32 | hypothetical protein | phrog_4252 | unknown function | unknown function | 1 | 16048 | 16209 |
| APD23098.1 | KY065478_p6 | hypothetical protein | phrog_4679 | unknown function | unknown function | 1 | 4286 | 4420 |
| APD23116.1 | KY065478_p24 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 9687 | 10880 |
| APD23102.1 | KY065478_p10 | hypothetical protein | phrog_4192 | unknown function | unknown function | 1 | 5304 | 5507 |
| APD23120.1 | KY065478_p28 | hypothetical protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 12741 | 13562 |
| APD23143.1 | KY065478_p51 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 26458 | 26973 |
| APD23107.1 | KY065478_p15 | hypothetical protein | phrog_2273 | unknown function | unknown function | 1 | 6434 | 6706 |
| APD23146.1 | KY065478_p54 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 27759 | 28139 |
| APD23144.1 | KY065478_p52 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 26970 | 27338 |
| APD23131.1 | KY065478_p39 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 18749 | 19228 |
| APD23147.1 | KY065478_p55 | hypothetical protein | phrog_2066 | unknown function | unknown function | 1 | 28178 | 28528 |
| APD23101.1 | KY065478_p9 | hypothetical protein | phrog_6987 | unknown function | unknown function | 1 | 4865 | 5065 |
| APD23153.1 | KY065478_p61 | hypothetical protein | phrog_1625 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 38808 | 39107 |
| APD23142.1 | KY065478_p50 | hypothetical protein | phrog_2168 | unknown function | unknown function | 1 | 26145 | 26483 |
| APD23118.1 | KY065478_p26 | NTP-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 11215 | 12042 |
| APD23119.1 | KY065478_p27 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12062 | 12568 |
| APD23096.1 | KY065478_p4 | hypothetical protein | phrog_4488 | unknown function | unknown function | 1 | 3458 | 3589 |
| APD23135.1 | KY065478_p43 | RimM protein | phrog_15041 | unknown function | unknown function | 1 | 23285 | 23512 |
| APD23104.1 | KY065478_p12 | hypothetical protein | phrog_2317 | unknown function | unknown function | 1 | 5762 | 5917 |
| APD23128.1 | KY065478_p36 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 17037 | 17474 |
| APD23130.1 | KY065478_p38 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 17915 | 18319 |
| APD23129.1 | KY065478_p37 | hypothetical protein | phrog_3476 | unknown function | unknown function | 1 | 17471 | 17842 |
| APD23152.1 | KY065478_p60 | hypothetical protein | phrog_1164 | unknown function | unknown function | 1 | 38448 | 38798 |
| APD23105.1 | KY065478_p13 | hypothetical protein | phrog_1534 | unknown function | unknown function | 1 | 5914 | 6084 |
| APD23132.1 | KY065478_p40 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 19206 | 20504 |
| APD23115.1 | KY065478_p23 | hypothetical protein | phrog_1981 | unknown function | unknown function | 1 | 9239 | 9724 |
| APD23151.1 | KY065478_p59 | hypothetical protein | phrog_1137 | unknown function | unknown function | 1 | 38242 | 38445 |
| APD23123.1 | KY065478_p31 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 15353 | 16048 |