| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY065479 |
Definition |
Streptococcus phage IPP39, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
37761 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
38.36 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD23189.1 | KY065479_p34 | major capsid protein | phrog_840 | major head protein | head and packaging | 1 | 20007 | 20888 |
| APD23193.1 | KY065479_p38 | minor capsid protein | phrog_556 | minor head protein | head and packaging | 1 | 21949 | 22293 |
| APD23164.1 | KY065479_p9 | hypothetical protein | phrog_2715 | unknown function | unknown function | 1 | 4907 | 5485 |
| APD23163.1 | KY065479_p8 | hypothetical protein | phrog_2273 | unknown function | unknown function | 1 | 4558 | 4824 |
| APD23187.1 | KY065479_p32 | minor capsid protein 2 | phrog_581 | minor head protein | head and packaging | 1 | 18133 | 19287 |
| APD23172.1 | KY065479_p17 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 9434 | 9646 |
| APD23194.1 | KY065479_p39 | minor capsid protein | phrog_913 | minor head protein | head and packaging | 1 | 22293 | 22700 |
| APD23177.1 | KY065479_p22 | hypothetical protein | phrog_2003 | unknown function | unknown function | 1 | 11162 | 11455 |
| APD23195.1 | KY065479_p40 | major tail shaft protein | phrog_820 | major tail protein | tail | 1 | 22697 | 23146 |
| APD23196.1 | KY065479_p41 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 23211 | 23705 |
| APD23160.1 | KY065479_p5 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 2848 | 3573 |
| APD23158.1 | KY065479_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1589 | 1735 |
| APD23175.1 | KY065479_p20 | hypothetical protein | phrog_834 | unknown function | unknown function | 1 | 10316 | 10630 |
| APD23182.1 | KY065479_p27 | PBSX family terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 14457 | 15692 |
| APD23162.1 | KY065479_p7 | replication protein | phrog_1456 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 4060 | 4326 |
| APD23165.1 | KY065479_p10 | single-strand DNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5491 | 6192 |
| APD23188.1 | KY065479_p33 | minor structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 19426 | 19989 |
| APD23200.1 | KY065479_p45 | antireceptor | phrog_588 | tail fiber protein and host specificity | tail | 1 | 29045 | 33652 |
| APD23198.1 | KY065479_p43 | hypothetical protein | phrog_1686 | tail length tape measure protein | tail | 1 | 24272 | 27553 |
| APD23159.1 | KY065479_p4 | hypothetical protein | phrog_28347 | unknown function | unknown function | -1 | 1807 | 1968 |
| APD23156.1 | KY065479_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 1 | 933 |
| APD23179.1 | KY065479_p24 | ParB-like protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 11913 | 13007 |
| APD23166.1 | KY065479_p11 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 6195 | 7187 |
| APD23205.1 | KY065479_p50 | lytic amidase | phrog_1110 | endolysin | lysis | 1 | 36805 | 37761 |
| APD23173.1 | KY065479_p18 | holliday junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9708 | 10058 |
| APD23181.1 | KY065479_p26 | hypothetical protein | phrog_2412 | unknown function | unknown function | 1 | 14093 | 14392 |
| APD23197.1 | KY065479_p42 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 23710 | 24279 |
| APD23167.1 | KY065479_p12 | hypothetical protein | phrog_4139 | unknown function | unknown function | 1 | 7209 | 7385 |
| APD23171.1 | KY065479_p16 | hypothetical protein | phrog_1029 | unknown function | unknown function | 1 | 8680 | 9417 |
| APD23157.1 | KY065479_p2 | hypothetical protein | phrog_5214 | unknown function | unknown function | -1 | 1056 | 1571 |
| APD23201.1 | KY065479_p46 | structural protein | phrog_372 | tail protein | tail | 1 | 33663 | 35711 |
| APD23199.1 | KY065479_p44 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 27550 | 29064 |
| APD23174.1 | KY065479_p19 | hypothetical protein | phrog_4706 | unknown function | unknown function | 1 | 10060 | 10266 |
| APD23178.1 | KY065479_p23 | hypothetical protein | phrog_3511 | unknown function | unknown function | 1 | 11455 | 11847 |
| APD23186.1 | KY065479_p31 | hypothetical protein | phrog_3755 | unknown function | unknown function | 1 | 17921 | 18094 |
| APD23170.1 | KY065479_p15 | hypothetical protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | 1 | 8244 | 8678 |
| APD23176.1 | KY065479_p21 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 10617 | 11162 |
| APD23190.1 | KY065479_p35 | hypothetical protein | phrog_2910 | unknown function | unknown function | 1 | 20899 | 21132 |
| APD23191.1 | KY065479_p36 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 21175 | 21567 |
| APD23184.1 | KY065479_p29 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 17260 | 17508 |
| APD23161.1 | KY065479_p6 | hypothetical protein | phrog_5868 | unknown function | unknown function | 1 | 3620 | 3886 |
| APD23180.1 | KY065479_p25 | hypothetical protein | phrog_5057 | unknown function | unknown function | 1 | 12988 | 13734 |
| APD23169.1 | KY065479_p14 | hypothetical protein | phrog_3947 | unknown function | unknown function | 1 | 7987 | 8190 |
| APD23185.1 | KY065479_p30 | hypothetical protein | phrog_3392 | unknown function | unknown function | 1 | 17511 | 17906 |
| APD23168.1 | KY065479_p13 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7375 | 7920 |
| APD23183.1 | KY065479_p28 | minor capsid protein | phrog_533 | portal protein | head and packaging | 1 | 15756 | 17273 |
| APD23204.1 | KY065479_p49 | LL-H family holin | phrog_608 | holin | lysis | 1 | 36464 | 36796 |
| APD23202.1 | KY065479_p47 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 35765 | 36034 |
| APD23192.1 | KY065479_p37 | minor capsid protein 2 | phrog_793 | head-tail adaptor | connector | 1 | 21557 | 21949 |
| APD23203.1 | KY065479_p48 | holin 1 | phrog_199 | holin | lysis | 1 | 36131 | 36460 |