| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY065490 |
Definition |
Streptococcus phage IPP52, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
36805 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
38.14 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD23782.1 | KY065490_p45 | hypothetical protein | phrog_1686 | tail length tape measure protein | tail | 1 | 24199 | 27501 |
| APD23761.1 | KY065490_p24 | hypothetical protein | phrog_28798 | unknown function | unknown function | 1 | 11190 | 11327 |
| APD23784.1 | KY065490_p47 | minor structural protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 29014 | 32670 |
| APD23740.1 | KY065490_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 1795 | 2175 |
| APD23769.1 | KY065490_p32 | minor capsid protein | phrog_533 | portal protein | head and packaging | 1 | 16362 | 17879 |
| APD23768.1 | KY065490_p31 | PBSX family terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15063 | 16298 |
| APD23746.1 | KY065490_p9 | single-strand DNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4527 | 5225 |
| APD23757.1 | KY065490_p20 | hypothetical protein | phrog_4706 | unknown function | unknown function | 1 | 9814 | 10020 |
| APD23786.1 | KY065490_p49 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 34814 | 35083 |
| APD23775.1 | KY065490_p38 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 21121 | 21513 |
| APD23776.1 | KY065490_p39 | minor capsid protein 2 | phrog_793 | head-tail adaptor | connector | 1 | 21503 | 21874 |
| APD23785.1 | KY065490_p48 | structural protein | phrog_372 | tail protein | tail | 1 | 32682 | 34760 |
| APD23741.1 | KY065490_p4 | DNA-binding protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2197 | 2559 |
| APD23750.1 | KY065490_p13 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6748 | 7323 |
| APD23777.1 | KY065490_p40 | minor capsid protein | phrog_556 | minor head protein | head and packaging | 1 | 21874 | 22218 |
| APD23752.1 | KY065490_p15 | type II DNA modification methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 7635 | 8717 |
| APD23742.1 | KY065490_p5 | DNA-binding protein | phrog_1337 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 2856 | 3047 |
| APD23764.1 | KY065490_p27 | hypothetical protein | phrog_3511 | unknown function | unknown function | 1 | 12060 | 12452 |
| APD23770.1 | KY065490_p33 | hypothetical protein | phrog_3755 | unknown function | unknown function | 1 | 17833 | 18039 |
| APD23756.1 | KY065490_p19 | holliday junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9462 | 9812 |
| APD23772.1 | KY065490_p35 | minor structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 19372 | 19935 |
| APD23771.1 | KY065490_p34 | minor capsid protein 2 | phrog_581 | minor head protein | head and packaging | 1 | 18082 | 19233 |
| APD23753.1 | KY065490_p16 | hypothetical protein | phrog_3947 | unknown function | unknown function | 1 | 8740 | 8964 |
| APD23748.1 | KY065490_p11 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 5568 | 6560 |
| APD23745.1 | KY065490_p8 | hypothetical protein | phrog_2715 | unknown function | unknown function | 1 | 4069 | 4521 |
| APD23767.1 | KY065490_p30 | hypothetical protein | phrog_2412 | unknown function | unknown function | 1 | 14525 | 14998 |
| APD23773.1 | KY065490_p36 | major capsid protein | phrog_840 | major head protein | head and packaging | 1 | 19953 | 20834 |
| APD23749.1 | KY065490_p12 | hypothetical protein | phrog_4139 | unknown function | unknown function | 1 | 6582 | 6758 |
| APD23765.1 | KY065490_p28 | ParB-like protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 12518 | 13612 |
| APD23789.1 | KY065490_p52 | lytic amidase | phrog_1110 | endolysin | lysis | 1 | 35849 | 36805 |
| APD23758.1 | KY065490_p21 | hypothetical protein | phrog_834 | unknown function | unknown function | 1 | 10069 | 10386 |
| APD23759.1 | KY065490_p22 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 10373 | 10903 |
| APD23755.1 | KY065490_p18 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 9188 | 9400 |
| APD23751.1 | KY065490_p14 | hypothetical protein | phrog_8736 | unknown function | unknown function | 1 | 7337 | 7621 |
| APD23787.1 | KY065490_p50 | holin 1 | phrog_199 | holin | lysis | 1 | 35180 | 35509 |
| APD23780.1 | KY065490_p43 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 23136 | 23624 |
| APD23779.1 | KY065490_p42 | major tail shaft protein | phrog_820 | major tail protein | tail | 1 | 22622 | 23071 |
| APD23754.1 | KY065490_p17 | hypothetical protein | phrog_16580 | unknown function | unknown function | 1 | 8974 | 9171 |
| APD23778.1 | KY065490_p41 | minor capsid protein | phrog_913 | minor head protein | head and packaging | 1 | 22218 | 22625 |
| APD23760.1 | KY065490_p23 | hypothetical protein | phrog_2003 | unknown function | unknown function | 1 | 10903 | 11190 |
| APD23744.1 | KY065490_p7 | hypothetical protein | phrog_2273 | unknown function | unknown function | 1 | 3720 | 3986 |
| APD23781.1 | KY065490_p44 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 23643 | 24206 |
| APD23739.1 | KY065490_p2 | hypothetical protein | phrog_5214 | unknown function | unknown function | -1 | 1262 | 1777 |
| APD23774.1 | KY065490_p37 | hypothetical protein | phrog_2910 | unknown function | unknown function | 1 | 20845 | 21078 |
| APD23743.1 | KY065490_p6 | replication protein | phrog_1456 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 3222 | 3488 |
| APD23747.1 | KY065490_p10 | hypothetical protein | phrog_10455 | unknown function | unknown function | 1 | 5229 | 5555 |
| APD23763.1 | KY065490_p26 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 11821 | 12063 |
| APD23738.1 | KY065490_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 1 | 1137 |
| APD23783.1 | KY065490_p46 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 27498 | 29012 |
| APD23762.1 | KY065490_p25 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 11342 | 11761 |
| APD23788.1 | KY065490_p51 | LL-H family holin | phrog_608 | holin | lysis | 1 | 35513 | 35845 |
| APD23766.1 | KY065490_p29 | hypothetical protein | phrog_5057 | unknown function | unknown function | 1 | 13593 | 14339 |