| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY084243 |
Definition |
Pectobacterium phage PP74, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Berlinvirus; Pectobacterium virus PP74. |
DB of origin |
NUCCORE |
Length |
39790 |
Host Name |
Pectobacterium wasabiae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
48.63 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD19618.1 | KY084243_p1 | ocr protein | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 958 | 1305 |
| APD19636.1 | KY084243_p24 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13380 | 15494 |
| APD19659.1 | KY084243_p46 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 36078 | 36347 |
| APD19663.1 | KY084243_p4 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 1585 | 1785 |
| APD19638.1 | KY084243_p26 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 15801 | 16010 |
| APD19664.1 | KY084243_p21 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 12331 | 12543 |
| APD19655.1 | KY084243_p43 | tail fiber protein | phrog_13980 | tail fiber protein | tail | 1 | 33805 | 34743 |
| APD19662.1 | KY084243_p2 | hypothetical protein | phrog_7202 | unknown function | unknown function | 1 | 1302 | 1466 |
| APD19624.1 | KY084243_p11 | hypothetical protein | phrog_10145 | unknown function | unknown function | 1 | 7114 | 7194 |
| APD19649.1 | KY084243_p37 | tubular protein B | phrog_457 | tail protein | tail | 1 | 23041 | 25416 |
| APD19658.1 | KY084243_p47 | Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 36488 | 36922 |
| APD19661.1 | KY084243_p49 | HNH homing endonuclease | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38713 | 39162 |
| APD19634.1 | KY084243_p22 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 12558 | 12869 |
| APD19629.1 | KY084243_p16 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8349 | 9047 |
| APD19642.1 | KY084243_p30 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 17572 | 17850 |
| APD19628.1 | KY084243_p15 | RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8088 | 8279 |
| APD19627.1 | KY084243_p14 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 7956 | 8075 |
| APD19635.1 | KY084243_p23 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 12951 | 13367 |
| APD19637.1 | KY084243_p25 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 15514 | 15801 |
| APD19621.1 | KY084243_p6 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2059 | 4710 |
| APD19650.1 | KY084243_p38 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 25494 | 25913 |
| APD19660.1 | KY084243_p48 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 36932 | 38689 |
| APD19648.1 | KY084243_p36 | tubular protein A | phrog_446 | tail protein | tail | 1 | 22397 | 23005 |
| APD19632.1 | KY084243_p19 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 9924 | 10379 |
| APD19644.1 | KY084243_p32 | head to tail connecting protein | phrog_449 | head-tail adaptor | connector | 1 | 18203 | 19804 |
| APD19666.1 | KY084243_p8 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 5453 | 5602 |
| APD19654.1 | KY084243_p42 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29224 | 33732 |
| APD19640.1 | KY084243_p28 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16225 | 17139 |
| APD19619.1 | KY084243_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1463 | 1591 |
| APD19665.1 | KY084243_p7 | hypothetical protein | phrog_8103 | unknown function | unknown function | 1 | 4798 | 5370 |
| APD19633.1 | KY084243_p20 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 10547 | 12256 |
| APD19622.1 | KY084243_p9 | deoxyguanosine triphosphohydrolase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 5602 | 5862 |
| APD19625.1 | KY084243_p12 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 7221 | 7484 |
| APD19646.1 | KY084243_p34 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21021 | 22061 |
| APD19657.1 | KY084243_p45 | holin | phrog_920 | holin | lysis | 1 | 35879 | 36076 |
| APD19643.1 | KY084243_p31 | tail protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17865 | 18188 |
| APD19656.1 | KY084243_p44 | tail fiber protein | singleton | unknown function | unknown function | 1 | 34718 | 35866 |
| APD19626.1 | KY084243_p13 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 7484 | 7963 |
| APD19647.1 | KY084243_p35 | capsid assembly protein | phrog_7473 | unknown function | unknown function | 1 | 22079 | 22333 |
| APD19651.1 | KY084243_p39 | hypothetical protein | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 25984 | 26298 |
| AUO79640.1 | KY084243_p50 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 39408 | 39563 |
| APD19620.1 | KY084243_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1769 | 1984 |
| APD19623.1 | KY084243_p10 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 5970 | 6998 |
| APD19631.1 | KY084243_p18 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9481 | 9927 |
| APD19630.1 | KY084243_p17 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9048 | 9500 |
| APD19639.1 | KY084243_p27 | hypothetical protein | phrog_6163 | unknown function | unknown function | 1 | 16007 | 16228 |
| APD19645.1 | KY084243_p33 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 19911 | 20822 |
| APD19652.1 | KY084243_p40 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26301 | 26906 |
| APD19653.1 | KY084243_p41 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 26921 | 29200 |
| APD19641.1 | KY084243_p29 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17309 | 17554 |