| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY087993 |
Definition |
Mycobacterium phage Hammy, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
61812 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
67.22 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APD18201.1 | KY087993_p33 | endonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28668 | 29801 |
| APD18257.1 | KY087993_p34 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 29798 | 30028 |
| APD18200.1 | KY087993_p32 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28430 | 28681 |
| APD18215.1 | KY087993_p51 | helix-turn-helix DNA binding protein | phrog_2286 | unknown function | unknown function | 1 | 37647 | 38435 |
| APD18212.1 | KY087993_p46 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36363 | 36572 |
| APD18180.1 | KY087993_p8 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4318 | 6891 |
| APD18204.1 | KY087993_p37 | hypothetical protein | phrog_26689 | unknown function | unknown function | 1 | 30919 | 31059 |
| APD18185.1 | KY087993_p13 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 9293 | 9691 |
| APD18252.1 | KY087993_p89 | hypothetical protein | phrog_4631 | unknown function | unknown function | 1 | 58453 | 59079 |
| APD18183.1 | KY087993_p11 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7818 | 8747 |
| APD18179.1 | KY087993_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2820 | 4373 |
| APD18190.1 | KY087993_p19 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 12190 | 16329 |
| APD18239.1 | KY087993_p75 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 51468 | 51680 |
| APD18233.1 | KY087993_p69 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48295 | 48888 |
| APD18250.1 | KY087993_p87 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 57366 | 58055 |
| APD18265.1 | KY087993_p25 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 21316 | 23694 |
| APD18262.1 | KY087993_p5 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1173 | 1400 |
| APD18247.1 | KY087993_p84 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56193 | 56771 |
| APD18220.1 | KY087993_p56 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 40273 | 40563 |
| APD18181.1 | KY087993_p9 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6888 | 7079 |
| APD18177.1 | KY087993_p4 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 977 | 1180 |
| APD18224.1 | KY087993_p60 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42286 | 42591 |
| APD18202.1 | KY087993_p35 | helix-turn-helix DNA binding protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30216 | 30635 |
| APD18254.1 | KY087993_p91 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 59794 | 60492 |
| APD18242.1 | KY087993_p79 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 53520 | 53783 |
| APD18253.1 | KY087993_p90 | hypothetical protein | phrog_24868 | unknown function | unknown function | 1 | 59305 | 59682 |
| APD18243.1 | KY087993_p80 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53780 | 53992 |
| APD18193.1 | KY087993_p23 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19914 | 20996 |
| APD18198.1 | KY087993_p30 | holin | phrog_565 | holin | lysis | 1 | 27634 | 28098 |
| APD18264.1 | KY087993_p49 | membrane domain protein | phrog_2654 | unknown function | unknown function | 1 | 37232 | 37396 |
| APD18187.1 | KY087993_p15 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9959 | 10375 |
| APD18194.1 | KY087993_p24 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 21002 | 21316 |
| APD18184.1 | KY087993_p12 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8907 | 9293 |
| APD18217.1 | KY087993_p53 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 38683 | 39417 |
| APD18231.1 | KY087993_p67 | DNA primase/polymerase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44569 | 47190 |
| APD18256.1 | KY087993_p94 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61452 | 61748 |
| APD18240.1 | KY087993_p76 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 51811 | 52200 |
| APD18235.1 | KY087993_p71 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 50000 | 50383 |
| APD18223.1 | KY087993_p59 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41420 | 42289 |
| APD18261.1 | KY087993_p21 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17572 | 19338 |
| APD18195.1 | KY087993_p26 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23691 | 24695 |
| APD18227.1 | KY087993_p63 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43133 | 43258 |
| APD18255.1 | KY087993_p93 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 61201 | 61452 |
| APD18249.1 | KY087993_p86 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 56908 | 57165 |
| APD18236.1 | KY087993_p72 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50380 | 50652 |
| APD18210.1 | KY087993_p44 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35533 | 35892 |
| APD18263.1 | KY087993_p47 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 36576 | 36923 |
| APD18248.1 | KY087993_p85 | hypothetical protein | phrog_16857 | unknown function | unknown function | 1 | 56768 | 56911 |
| APD18221.1 | KY087993_p57 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40576 | 41130 |
| APD18245.1 | KY087993_p82 | RNA ligase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54394 | 55584 |
| APD18230.1 | KY087993_p66 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44194 | 44529 |
| APD18246.1 | KY087993_p83 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55586 | 56200 |
| APD18213.1 | KY087993_p48 | hypothetical protein | phrog_6733 | unknown function | unknown function | 1 | 36996 | 37232 |
| APD18191.1 | KY087993_p20 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16436 | 17572 |
| APD18196.1 | KY087993_p27 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24789 | 25160 |
| APD18176.1 | KY087993_p3 | terminase small subunit | phrog_2074 | unknown function | unknown function | 1 | 413 | 670 |
| APD18189.1 | KY087993_p18 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11319 | 11774 |
| APD18182.1 | KY087993_p10 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7195 | 7752 |
| APD18232.1 | KY087993_p68 | resolvase | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47610 | 48287 |
| APD18260.1 | KY087993_p17 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11319 | 12190 |
| APD18208.1 | KY087993_p42 | hypothetical protein | phrog_8155 | unknown function | unknown function | 1 | 34276 | 34557 |
| APD18225.1 | KY087993_p61 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 42649 | 42927 |
| APD18234.1 | KY087993_p70 | HTH DNA binding protein | phrog_908 | unknown function | unknown function | 1 | 48885 | 49988 |
| APD18237.1 | KY087993_p73 | membrane domain protein | phrog_21827 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 50686 | 51006 |
| APD18203.1 | KY087993_p36 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30632 | 30922 |
| APD18244.1 | KY087993_p81 | hypothetical protein | phrog_19138 | unknown function | unknown function | 1 | 54000 | 54293 |
| APD18216.1 | KY087993_p52 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38432 | 38686 |
| APD18222.1 | KY087993_p58 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41127 | 41423 |
| APD18206.1 | KY087993_p39 | hypothetical protein | phrog_12017 | unknown function | unknown function | -1 | 32123 | 32335 |
| APD18258.1 | KY087993_p40 | helix-turn-helix DNA binding domain protein | phrog_33884 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32336 | 32743 |
| APD18199.1 | KY087993_p31 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 28095 | 28433 |
| APD18211.1 | KY087993_p45 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 36187 | 36366 |
| APD18178.1 | KY087993_p6 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1384 | 2808 |
| APD18188.1 | KY087993_p16 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10525 | 11139 |
| APD18241.1 | KY087993_p77 | membrane domain protein | phrog_2342 | unknown function | unknown function | 1 | 52295 | 53128 |
| APD18214.1 | KY087993_p50 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 37393 | 37650 |
| APD18175.1 | KY087993_p2 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 207 | 416 |
| APD18209.1 | KY087993_p43 | membrane domain protein | phrog_950 | unknown function | unknown function | -1 | 34657 | 35475 |
| APD18266.1 | KY087993_p29 | lysin B | phrog_102 | endolysin | lysis | 1 | 26882 | 27622 |
| APD18219.1 | KY087993_p55 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39813 | 40280 |
| APD18259.1 | KY087993_p78 | hypothetical protein | phrog_7731 | unknown function | unknown function | 1 | 53125 | 53523 |
| APD18229.1 | KY087993_p65 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43955 | 44194 |
| APD18197.1 | KY087993_p28 | lysin A | phrog_1519 | endolysin | lysis | 1 | 25182 | 26885 |
| APD18174.1 | KY087993_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 70 | 210 |
| APD18218.1 | KY087993_p54 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 39427 | 39816 |
| APD18228.1 | KY087993_p64 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43342 | 43854 |
| APD18251.1 | KY087993_p88 | hypothetical protein | phrog_20958 | unknown function | unknown function | 1 | 58164 | 58340 |
| APD18267.1 | KY087993_p92 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 60872 | 61186 |
| APD18186.1 | KY087993_p14 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 9681 | 9962 |
| APD18207.1 | KY087993_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 33006 | 34274 |
| APD18226.1 | KY087993_p62 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42924 | 43136 |
| APD18238.1 | KY087993_p74 | hypothetical protein | phrog_7658 | unknown function | unknown function | 1 | 51139 | 51408 |
| APD18205.1 | KY087993_p38 | queuine tRNA-glycosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 31194 | 32066 |
| APD18192.1 | KY087993_p22 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 19338 | 19835 |