Genomic map of Mycobacterium phage Hammy (KY087993)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY087993
Definition
Mycobacterium phage Hammy, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus.
DB of origin
NUCCORE
Length
61812
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
67.22
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APD18201.1 KY087993_p33 endonuclease phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 28668 29801
APD18257.1 KY087993_p34 hypothetical protein phrog_1042 unknown function unknown function 1 29798 30028
APD18200.1 KY087993_p32 hypothetical protein phrog_1738 unknown function unknown function 1 28430 28681
APD18215.1 KY087993_p51 helix-turn-helix DNA binding protein phrog_2286 unknown function unknown function 1 37647 38435
APD18212.1 KY087993_p46 excise phrog_66 excisionase and transcriptional regulator integration and excision 1 36363 36572
APD18180.1 KY087993_p8 capsid maturation protease phrog_1752 head maturation protease head and packaging 1 4318 6891
APD18204.1 KY087993_p37 hypothetical protein phrog_26689 unknown function unknown function 1 30919 31059
APD18185.1 KY087993_p13 head-to-tail connector protein phrog_763 head-tail adaptor connector 1 9293 9691
APD18252.1 KY087993_p89 hypothetical protein phrog_4631 unknown function unknown function 1 58453 59079
APD18183.1 KY087993_p11 major capsid protein phrog_10 major head protein head and packaging 1 7818 8747
APD18179.1 KY087993_p7 portal protein phrog_104 portal protein head and packaging 1 2820 4373
APD18190.1 KY087993_p19 tape measure protein phrog_971 endolysin lysis 1 12190 16329
APD18239.1 KY087993_p75 hypothetical protein phrog_5546 unknown function unknown function 1 51468 51680
APD18233.1 KY087993_p69 hypothetical protein phrog_3478 unknown function unknown function 1 48295 48888
APD18250.1 KY087993_p87 hypothetical protein phrog_2433 unknown function unknown function 1 57366 58055
APD18265.1 KY087993_p25 minor tail protein phrog_746 minor tail protein tail 1 21316 23694
APD18262.1 KY087993_p5 hypothetical protein phrog_1459 terminase small subunit head and packaging 1 1173 1400
APD18247.1 KY087993_p84 hypothetical protein phrog_2493 unknown function unknown function 1 56193 56771
APD18220.1 KY087993_p56 hypothetical protein phrog_1956 unknown function unknown function 1 40273 40563
APD18181.1 KY087993_p9 hypothetical protein phrog_1757 unknown function unknown function 1 6888 7079
APD18177.1 KY087993_p4 hypothetical protein phrog_2622 unknown function unknown function 1 977 1180
APD18224.1 KY087993_p60 hypothetical protein phrog_3492 unknown function unknown function 1 42286 42591
APD18202.1 KY087993_p35 helix-turn-helix DNA binding protein phrog_2311 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 30216 30635
APD18254.1 KY087993_p91 hypothetical protein phrog_4095 unknown function unknown function 1 59794 60492
APD18242.1 KY087993_p79 hypothetical protein phrog_5288 unknown function unknown function 1 53520 53783
APD18253.1 KY087993_p90 hypothetical protein phrog_24868 unknown function unknown function 1 59305 59682
APD18243.1 KY087993_p80 hypothetical protein phrog_666 unknown function unknown function 1 53780 53992
APD18193.1 KY087993_p23 minor tail protein phrog_1565 minor tail protein tail 1 19914 20996
APD18198.1 KY087993_p30 holin phrog_565 holin lysis 1 27634 28098
APD18264.1 KY087993_p49 membrane domain protein phrog_2654 unknown function unknown function 1 37232 37396
APD18187.1 KY087993_p15 head-to-tail connector protein phrog_123 tail terminator connector 1 9959 10375
APD18194.1 KY087993_p24 minor tail protein phrog_1736 minor tail protein tail 1 21002 21316
APD18184.1 KY087993_p12 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 8907 9293
APD18217.1 KY087993_p53 hypothetical protein phrog_2781 unknown function unknown function 1 38683 39417
APD18231.1 KY087993_p67 DNA primase/polymerase phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 44569 47190
APD18256.1 KY087993_p94 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61452 61748
APD18240.1 KY087993_p76 hypothetical protein phrog_6045 unknown function unknown function 1 51811 52200
APD18235.1 KY087993_p71 hypothetical protein phrog_549 unknown function unknown function 1 50000 50383
APD18223.1 KY087993_p59 exonuclease phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 41420 42289
APD18261.1 KY087993_p21 minor tail protein phrog_110 minor tail protein tail 1 17572 19338
APD18195.1 KY087993_p26 hypothetical protein phrog_416 minor tail protein tail 1 23691 24695
APD18227.1 KY087993_p63 hypothetical protein phrog_2388 unknown function unknown function 1 43133 43258
APD18255.1 KY087993_p93 hypothetical protein phrog_4561 unknown function unknown function 1 61201 61452
APD18249.1 KY087993_p86 hypothetical protein phrog_2074 unknown function unknown function 1 56908 57165
APD18236.1 KY087993_p72 hypothetical protein phrog_1338 unknown function unknown function 1 50380 50652
APD18210.1 KY087993_p44 immunity repressor phrog_1746 transcriptional repressor transcription regulation -1 35533 35892
APD18263.1 KY087993_p47 hypothetical protein phrog_2908 unknown function unknown function 1 36576 36923
APD18248.1 KY087993_p85 hypothetical protein phrog_16857 unknown function unknown function 1 56768 56911
APD18221.1 KY087993_p57 DNA polymerase III subunit phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 40576 41130
APD18245.1 KY087993_p82 RNA ligase phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism 1 54394 55584
APD18230.1 KY087993_p66 HNH endonuclease phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44194 44529
APD18246.1 KY087993_p83 hypothetical protein phrog_2822 unknown function unknown function 1 55586 56200
APD18213.1 KY087993_p48 hypothetical protein phrog_6733 unknown function unknown function 1 36996 37232
APD18191.1 KY087993_p20 minor tail protein phrog_106 minor tail protein tail 1 16436 17572
APD18196.1 KY087993_p27 hypothetical protein phrog_240 head protein head and packaging 1 24789 25160
APD18176.1 KY087993_p3 terminase small subunit phrog_2074 unknown function unknown function 1 413 670
APD18189.1 KY087993_p18 tail assembly chaperone phrog_1861 unknown function unknown function 1 11319 11774
APD18182.1 KY087993_p10 scaffolding protein phrog_1793 head scaffolding protein head and packaging 1 7195 7752
APD18232.1 KY087993_p68 resolvase phrog_3055 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 47610 48287
APD18260.1 KY087993_p17 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 11319 12190
APD18208.1 KY087993_p42 hypothetical protein phrog_8155 unknown function unknown function 1 34276 34557
APD18225.1 KY087993_p61 hypothetical protein phrog_5466 unknown function unknown function 1 42649 42927
APD18234.1 KY087993_p70 HTH DNA binding protein phrog_908 unknown function unknown function 1 48885 49988
APD18237.1 KY087993_p73 membrane domain protein phrog_21827 membrane protein moron, auxiliary metabolic gene and host takeover 1 50686 51006
APD18203.1 KY087993_p36 hypothetical protein phrog_4112 unknown function unknown function 1 30632 30922
APD18244.1 KY087993_p81 hypothetical protein phrog_19138 unknown function unknown function 1 54000 54293
APD18216.1 KY087993_p52 WhiB family transcription factor phrog_472 WhiB transcriptional factor transcription regulation 1 38432 38686
APD18222.1 KY087993_p58 hypothetical protein phrog_2870 unknown function unknown function 1 41127 41423
APD18206.1 KY087993_p39 hypothetical protein phrog_12017 unknown function unknown function -1 32123 32335
APD18258.1 KY087993_p40 helix-turn-helix DNA binding domain protein phrog_33884 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 32336 32743
APD18199.1 KY087993_p31 hypothetical protein phrog_3413 unknown function unknown function 1 28095 28433
APD18211.1 KY087993_p45 CRO protein phrog_1702 transcriptional repressor transcription regulation 1 36187 36366
APD18178.1 KY087993_p6 terminase large subunit phrog_2 terminase large subunit head and packaging 1 1384 2808
APD18188.1 KY087993_p16 major tail protein phrog_117 major tail protein tail 1 10525 11139
APD18241.1 KY087993_p77 membrane domain protein phrog_2342 unknown function unknown function 1 52295 53128
APD18214.1 KY087993_p50 hypothetical protein phrog_3903 unknown function unknown function 1 37393 37650
APD18175.1 KY087993_p2 hypothetical protein phrog_2293 unknown function unknown function 1 207 416
APD18209.1 KY087993_p43 membrane domain protein phrog_950 unknown function unknown function -1 34657 35475
APD18266.1 KY087993_p29 lysin B phrog_102 endolysin lysis 1 26882 27622
APD18219.1 KY087993_p55 hypothetical protein phrog_3186 unknown function unknown function 1 39813 40280
APD18259.1 KY087993_p78 hypothetical protein phrog_7731 unknown function unknown function 1 53125 53523
APD18229.1 KY087993_p65 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 43955 44194
APD18197.1 KY087993_p28 lysin A phrog_1519 endolysin lysis 1 25182 26885
APD18174.1 KY087993_p1 hypothetical protein phrog_5391 unknown function unknown function 1 70 210
APD18218.1 KY087993_p54 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 39427 39816
APD18228.1 KY087993_p64 hypothetical protein phrog_1911 unknown function unknown function 1 43342 43854
APD18251.1 KY087993_p88 hypothetical protein phrog_20958 unknown function unknown function 1 58164 58340
APD18267.1 KY087993_p92 hypothetical protein phrog_747 unknown function unknown function 1 60872 61186
APD18186.1 KY087993_p14 head-to-tail connector protein phrog_387 neck protein connector 1 9681 9962
APD18207.1 KY087993_p41 integrase phrog_1 integrase integration and excision 1 33006 34274
APD18226.1 KY087993_p62 hypothetical protein phrog_1581 unknown function unknown function 1 42924 43136
APD18238.1 KY087993_p74 hypothetical protein phrog_7658 unknown function unknown function 1 51139 51408
APD18205.1 KY087993_p38 queuine tRNA-glycosyltransferase phrog_1279 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 31194 32066
APD18192.1 KY087993_p22 minor tail protein phrog_1697 minor tail protein tail 1 19338 19835