Genomic map of Ralstonia virus phiAp1 (KY117485)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY117485
Definition
Ralstonia virus phiAp1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Ayakvirus; Ralstonia virus Ap1.
DB of origin
NUCCORE
Length
44793
Host Name
Ralstonia solanacearum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
60.96
Number of singletons
17
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APU03171.1 KY117485_p30 DNA endonuclease phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 17520 17921
APU03151.1 KY117485_p10 hypothetical protein phrog_1540 unknown function unknown function 1 4737 5132
APU03187.1 KY117485_p46 internal virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 33864 37685
APU03197.1 KY117485_p56 hypothetical protein singleton unknown function unknown function 1 44080 44256
APU03157.1 KY117485_p16 hypothetical protein phrog_31557 unknown function unknown function 1 6796 7242
APU03179.1 KY117485_p38 head-tail connector protein phrog_449 head-tail adaptor connector 1 23293 24888
APU03178.1 KY117485_p37 structural protein phrog_3112 virion structural protein head and packaging 1 22969 23283
APU03160.1 KY117485_p19 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8857 10134
APU03183.1 KY117485_p42 tail tubular B phrog_457 tail protein tail 1 27567 29921
APU03143.1 KY117485_p2 hypothetical protein phrog_3199 unknown function unknown function 1 2521 2802
APU03188.1 KY117485_p47 long tail fiber phrog_13980 tail fiber protein tail 1 37688 40303
APU03153.1 KY117485_p12 hypothetical protein phrog_23350 unknown function unknown function 1 5643 5846
APU03159.1 KY117485_p18 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 8031 8897
APU03189.1 KY117485_p48 TerS subunit phrog_891 terminase small subunit head and packaging 1 40313 40603
APU03155.1 KY117485_p14 hypothetical protein singleton unknown function unknown function 1 6039 6362
APU03152.1 KY117485_p11 PagP-like protein phrog_3600 antimicrobial peptide resistance and lipid A acylation protein PagP moron, auxiliary metabolic gene and host takeover 1 5129 5629
APU03174.1 KY117485_p33 hypothetical protein singleton unknown function unknown function 1 19493 19672
APU03149.1 KY117485_p8 hypothetical protein phrog_11722 unknown function unknown function 1 4016 4408
APU03154.1 KY117485_p13 hypothetical protein singleton unknown function unknown function 1 5848 6042
APU03164.1 KY117485_p23 hypothetical protein singleton unknown function unknown function 1 11616 11810
APU03176.1 KY117485_p35 hypothetical protein singleton unknown function unknown function 1 22337 22531
APU03156.1 KY117485_p15 hypothetical protein singleton unknown function unknown function 1 6362 6799
APU03168.1 KY117485_p27 hypothetical protein phrog_2252 endolysin; inhibits RNA polymerase lysis 1 14711 15403
APU03150.1 KY117485_p9 hypothetical protein phrog_2510 unknown function unknown function 1 4405 4740
APU03193.1 KY117485_p52 i-spanin phrog_5151 Rz-like spanin lysis 1 43126 43494
APU03191.1 KY117485_p50 holin singleton unknown function unknown function 1 42346 42804
APU03169.1 KY117485_p28 hypothetical protein phrog_862 unknown function unknown function 1 15446 16411
APU03163.1 KY117485_p22 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 10759 11619
APU03173.1 KY117485_p32 DNA polymerase III epsilon subunit phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 18479 19282
APU03181.1 KY117485_p40 major capsid protein phrog_267 major head protein head and packaging 1 25910 26947
APU03194.1 KY117485_p53 O-spanin phrog_456 Rz-like spanin lysis 1 43382 43660
APU03185.1 KY117485_p44 internal virion protein A phrog_4295 internal virion protein head and packaging 1 30373 31104
APU03177.1 KY117485_p36 hypothetical protein phrog_6472 unknown function unknown function 1 22591 22968
APU03195.1 KY117485_p54 hypothetical protein singleton unknown function unknown function 1 43657 43884
APU03170.1 KY117485_p29 DNA exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16500 17396
APU03192.1 KY117485_p51 endolysin phrog_7 endolysin lysis 1 42614 43129
APU03175.1 KY117485_p34 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 19673 22105
APU03162.1 KY117485_p21 hypothetical protein singleton unknown function unknown function 1 10467 10772
APU03142.1 KY117485_p1 hypothetical protein phrog_1448 unknown function unknown function 1 1601 2344
APU03158.1 KY117485_p17 hypothetical protein phrog_34831 unknown function unknown function 1 7275 7796
APU03186.1 KY117485_p45 internal virion protein phrog_2083 internal virion lysozyme motif head and packaging 1 31114 33861
APU03148.1 KY117485_p7 hypothetical protein singleton unknown function unknown function 1 3870 4013
APU03166.1 KY117485_p25 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12016 14508
APU03196.1 KY117485_p55 hypothetical protein singleton unknown function unknown function 1 43901 44074
APU03161.1 KY117485_p20 DNA binding transcriptional regulator MarR family singleton unknown function unknown function 1 10135 10470
APU03190.1 KY117485_p49 TerL subunit phrog_38 terminase large subunit head and packaging 1 40610 42442
APU03145.1 KY117485_p4 hypothetical protein phrog_25437 unknown function unknown function 1 2914 3315
APU03167.1 KY117485_p26 hypothetical protein singleton unknown function unknown function 1 14505 14714
APU03180.1 KY117485_p39 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 24898 25857
APU03144.1 KY117485_p3 membrane protein singleton unknown function unknown function 1 2799 2906
APU03146.1 KY117485_p5 hypothetical protein phrog_19922 unknown function unknown function 1 3412 3669
APU03182.1 KY117485_p41 tail tubular A phrog_446 tail protein tail 1 27003 27563
APU03184.1 KY117485_p43 short tail fiber phrog_12032 short tail fiber protein tail 1 29924 30376
APU03172.1 KY117485_p31 poly(A) polymerase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 17918 18469
APU03165.1 KY117485_p24 hypothetical protein singleton unknown function unknown function 1 11807 12016
APU03147.1 KY117485_p6 hypothetical protein singleton unknown function unknown function 1 3672 3866