| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY117485 |
Definition |
Ralstonia virus phiAp1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Ayakvirus; Ralstonia virus Ap1. |
DB of origin |
NUCCORE |
Length |
44793 |
Host Name |
Ralstonia solanacearum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
60.96 |
Number of singletons |
17 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APU03171.1 | KY117485_p30 | DNA endonuclease | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 17520 | 17921 |
| APU03151.1 | KY117485_p10 | hypothetical protein | phrog_1540 | unknown function | unknown function | 1 | 4737 | 5132 |
| APU03187.1 | KY117485_p46 | internal virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 33864 | 37685 |
| APU03197.1 | KY117485_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44080 | 44256 |
| APU03157.1 | KY117485_p16 | hypothetical protein | phrog_31557 | unknown function | unknown function | 1 | 6796 | 7242 |
| APU03179.1 | KY117485_p38 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 23293 | 24888 |
| APU03178.1 | KY117485_p37 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 22969 | 23283 |
| APU03160.1 | KY117485_p19 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8857 | 10134 |
| APU03183.1 | KY117485_p42 | tail tubular B | phrog_457 | tail protein | tail | 1 | 27567 | 29921 |
| APU03143.1 | KY117485_p2 | hypothetical protein | phrog_3199 | unknown function | unknown function | 1 | 2521 | 2802 |
| APU03188.1 | KY117485_p47 | long tail fiber | phrog_13980 | tail fiber protein | tail | 1 | 37688 | 40303 |
| APU03153.1 | KY117485_p12 | hypothetical protein | phrog_23350 | unknown function | unknown function | 1 | 5643 | 5846 |
| APU03159.1 | KY117485_p18 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 8031 | 8897 |
| APU03189.1 | KY117485_p48 | TerS subunit | phrog_891 | terminase small subunit | head and packaging | 1 | 40313 | 40603 |
| APU03155.1 | KY117485_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6039 | 6362 |
| APU03152.1 | KY117485_p11 | PagP-like protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | 1 | 5129 | 5629 |
| APU03174.1 | KY117485_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19493 | 19672 |
| APU03149.1 | KY117485_p8 | hypothetical protein | phrog_11722 | unknown function | unknown function | 1 | 4016 | 4408 |
| APU03154.1 | KY117485_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5848 | 6042 |
| APU03164.1 | KY117485_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11616 | 11810 |
| APU03176.1 | KY117485_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22337 | 22531 |
| APU03156.1 | KY117485_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6362 | 6799 |
| APU03168.1 | KY117485_p27 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 14711 | 15403 |
| APU03150.1 | KY117485_p9 | hypothetical protein | phrog_2510 | unknown function | unknown function | 1 | 4405 | 4740 |
| APU03193.1 | KY117485_p52 | i-spanin | phrog_5151 | Rz-like spanin | lysis | 1 | 43126 | 43494 |
| APU03191.1 | KY117485_p50 | holin | singleton | unknown function | unknown function | 1 | 42346 | 42804 |
| APU03169.1 | KY117485_p28 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 15446 | 16411 |
| APU03163.1 | KY117485_p22 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 10759 | 11619 |
| APU03173.1 | KY117485_p32 | DNA polymerase III epsilon subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 18479 | 19282 |
| APU03181.1 | KY117485_p40 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 25910 | 26947 |
| APU03194.1 | KY117485_p53 | O-spanin | phrog_456 | Rz-like spanin | lysis | 1 | 43382 | 43660 |
| APU03185.1 | KY117485_p44 | internal virion protein A | phrog_4295 | internal virion protein | head and packaging | 1 | 30373 | 31104 |
| APU03177.1 | KY117485_p36 | hypothetical protein | phrog_6472 | unknown function | unknown function | 1 | 22591 | 22968 |
| APU03195.1 | KY117485_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43657 | 43884 |
| APU03170.1 | KY117485_p29 | DNA exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16500 | 17396 |
| APU03192.1 | KY117485_p51 | endolysin | phrog_7 | endolysin | lysis | 1 | 42614 | 43129 |
| APU03175.1 | KY117485_p34 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 19673 | 22105 |
| APU03162.1 | KY117485_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10467 | 10772 |
| APU03142.1 | KY117485_p1 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 1601 | 2344 |
| APU03158.1 | KY117485_p17 | hypothetical protein | phrog_34831 | unknown function | unknown function | 1 | 7275 | 7796 |
| APU03186.1 | KY117485_p45 | internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 31114 | 33861 |
| APU03148.1 | KY117485_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3870 | 4013 |
| APU03166.1 | KY117485_p25 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12016 | 14508 |
| APU03196.1 | KY117485_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43901 | 44074 |
| APU03161.1 | KY117485_p20 | DNA binding transcriptional regulator MarR family | singleton | unknown function | unknown function | 1 | 10135 | 10470 |
| APU03190.1 | KY117485_p49 | TerL subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 40610 | 42442 |
| APU03145.1 | KY117485_p4 | hypothetical protein | phrog_25437 | unknown function | unknown function | 1 | 2914 | 3315 |
| APU03167.1 | KY117485_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14505 | 14714 |
| APU03180.1 | KY117485_p39 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 24898 | 25857 |
| APU03144.1 | KY117485_p3 | membrane protein | singleton | unknown function | unknown function | 1 | 2799 | 2906 |
| APU03146.1 | KY117485_p5 | hypothetical protein | phrog_19922 | unknown function | unknown function | 1 | 3412 | 3669 |
| APU03182.1 | KY117485_p41 | tail tubular A | phrog_446 | tail protein | tail | 1 | 27003 | 27563 |
| APU03184.1 | KY117485_p43 | short tail fiber | phrog_12032 | short tail fiber protein | tail | 1 | 29924 | 30376 |
| APU03172.1 | KY117485_p31 | poly(A) polymerase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 17918 | 18469 |
| APU03165.1 | KY117485_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11807 | 12016 |
| APU03147.1 | KY117485_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3672 | 3866 |