| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY124276 |
Definition |
Pectobacterium phage PP81, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Pektosvirus; unclassified Pektosvirus; Pectobacterium virus PP81. |
DB of origin |
NUCCORE |
Length |
40727 |
Host Name |
Pectobacterium carotovorum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
43 |
%GC |
48.93 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APU03032.1 | KY124276_p4 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3535 | 6207 |
| APU03045.1 | KY124276_p18 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 14208 | 14504 |
| APU03067.1 | KY124276_p42 | Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 38272 | 38781 |
| APU03052.1 | KY124276_p25 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18458 | 19399 |
| APU03071.1 | KY124276_p28 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20630 | 20905 |
| APU03036.1 | KY124276_p9 | hypothetical protein | phrog_36492 | unknown function | unknown function | 1 | 8573 | 8815 |
| APU03059.1 | KY124276_p34 | tubular protein B | phrog_457 | tail protein | tail | 1 | 25631 | 28012 |
| APU03043.1 | KY124276_p16 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12101 | 13843 |
| APU03049.1 | KY124276_p22 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17727 | 17996 |
| APU03030.1 | KY124276_p2 | hypothetical protein | phrog_25044 | unknown function | unknown function | 1 | 1905 | 2222 |
| APU03031.1 | KY124276_p3 | seryl-threonyl protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2206 | 3366 |
| APU03033.1 | KY124276_p5 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 6366 | 6764 |
| APU03039.1 | KY124276_p12 | hypothetical protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 10188 | 10364 |
| APU03063.1 | KY124276_p38 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31399 | 35415 |
| APU03051.1 | KY124276_p24 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 18205 | 18471 |
| APU03029.1 | KY124276_p1 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1278 | 1721 |
| APU03058.1 | KY124276_p33 | tubular protein A | phrog_446 | tail protein | tail | 1 | 25018 | 25608 |
| APU03065.1 | KY124276_p40 | holin | phrog_920 | holin | lysis | 1 | 37741 | 37947 |
| APU03050.1 | KY124276_p23 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 17999 | 18208 |
| APU03069.1 | KY124276_p7 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7250 | 8353 |
| APU03044.1 | KY124276_p17 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 13973 | 14185 |
| APU03047.1 | KY124276_p20 | tRNA nucleotidyl transferase-related protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 14989 | 15519 |
| APU03042.1 | KY124276_p15 | endolysin | phrog_822 | amidase | lysis | 1 | 11627 | 12076 |
| APU03055.1 | KY124276_p30 | capsid scaffolidng protein | phrog_1052 | head assembly | head and packaging | 1 | 22601 | 23533 |
| APU03068.1 | KY124276_p43 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 38765 | 40504 |
| APU03066.1 | KY124276_p41 | terminase small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 37949 | 38218 |
| APU03040.1 | KY124276_p13 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10465 | 11169 |
| APU03070.1 | KY124276_p27 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19925 | 20350 |
| APU03037.1 | KY124276_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8812 | 9015 |
| APU03038.1 | KY124276_p11 | hypothetical protein | phrog_4943 | unknown function | unknown function | 1 | 9539 | 10198 |
| APU03056.1 | KY124276_p31 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23607 | 24647 |
| APU03054.1 | KY124276_p29 | head to tail connection protein | phrog_449 | head-tail adaptor | connector | 1 | 20918 | 22534 |
| APU03062.1 | KY124276_p37 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 29113 | 31374 |
| APU03057.1 | KY124276_p32 | hypothetical protein | phrog_7473 | unknown function | unknown function | 1 | 24716 | 24946 |
| APU03064.1 | KY124276_p39 | tail spike protein | phrog_8460 | tail fiber protein | tail | 1 | 35480 | 37741 |
| APU03035.1 | KY124276_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8446 | 8583 |
| APU03061.1 | KY124276_p36 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 28515 | 29096 |
| APU03048.1 | KY124276_p21 | DNA-directed DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15516 | 17699 |
| APU03034.1 | KY124276_p6 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6867 | 7040 |
| APU03046.1 | KY124276_p19 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 14488 | 14970 |
| APU03053.1 | KY124276_p26 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 19675 | 19920 |
| APU03060.1 | KY124276_p35 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 28102 | 28512 |
| APU03041.1 | KY124276_p14 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11169 | 11624 |