Genomic map of Salmonella phage STP03 (KY176369)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY176369
Definition
Salmonella phage STP03, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus.
DB of origin
NUCCORE
Length
43428
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
70
%GC
49.57
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APM00258.1 KY176369_p2 tail fiber protein phrog_469 tail protein tail -1 2068 4626
APM00313.1 KY176369_p57 hypothetical protein singleton unknown function unknown function 1 34073 34291
APM00302.1 KY176369_p46 hypothetical protein phrog_3766 unknown function unknown function -1 28125 28343
APM00316.1 KY176369_p60 hypothetical protein phrog_20588 unknown function unknown function 1 35131 35478
APM00287.1 KY176369_p31 hypothetical protein singleton unknown function unknown function -1 23295 23480
APM00266.1 KY176369_p10 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 9643 10773
APM00274.1 KY176369_p18 head-tail joining protein phrog_4451 unknown function unknown function -1 14491 14679
APM00263.1 KY176369_p7 hypothetical protein phrog_4557 unknown function unknown function -1 8295 8558
APM00259.1 KY176369_p3 hypothetical protein phrog_329 minor tail protein tail -1 4617 4982
APM00308.1 KY176369_p52 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 30448 30618
APM00326.1 KY176369_p70 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 41668 43092
APM00314.1 KY176369_p58 hypothetical protein phrog_3127 unknown function unknown function 1 34291 34818
APM00270.1 KY176369_p14 tail protein phrog_169 tail completion or Neck1 protein connector -1 12619 13014
APM00278.1 KY176369_p22 scaffold protein phrog_206 head scaffolding protein head and packaging -1 16476 17177
APM00299.1 KY176369_p43 hypothetical protein phrog_1040 peptidase HslV family other -1 27117 27551
APM00296.1 KY176369_p40 endolysin phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25951 26487
APM00300.1 KY176369_p44 hypothetical protein phrog_4947 unknown function unknown function -1 27557 27889
APM00292.1 KY176369_p36 hypothetical protein singleton unknown function unknown function -1 24563 24751
APM00325.1 KY176369_p69 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41174 41671
APM00269.1 KY176369_p13 hypothetical protein phrog_179 tail terminator connector -1 12200 12619
APM00272.1 KY176369_p16 neck protein phrog_3614 unknown function unknown function -1 13370 13975
APM00301.1 KY176369_p45 hypothetical protein singleton unknown function unknown function -1 27886 28122
APM00286.1 KY176369_p30 terminase small subunit phrog_3064 terminase head and packaging -1 22660 23205
APM00322.1 KY176369_p66 hypothetical protein phrog_14925 unknown function unknown function 1 40511 40663
APM00288.1 KY176369_p32 hypothetical protein phrog_2531 unknown function unknown function -1 23492 23791
APM00283.1 KY176369_p27 hypothetical protein phrog_8930 unknown function unknown function 1 19683 19886
APM00305.1 KY176369_p49 hypothetical protein phrog_18511 unknown function unknown function -1 28979 29164
APM00319.1 KY176369_p63 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 37847 40117
APM00315.1 KY176369_p59 hypothetical protein phrog_4965 unknown function unknown function 1 34862 35134
APM00289.1 KY176369_p33 NinH-like protein phrog_268 unknown function unknown function -1 23791 24015
APM00324.1 KY176369_p68 hypothetical protein phrog_4879 unknown function unknown function 1 40975 41172
APM00309.1 KY176369_p53 UvsX-like protein phrog_5169 unknown function unknown function 1 30615 30848
APM00282.1 KY176369_p26 head morphogenesis protein phrog_241 head morphogenesis head and packaging -1 18537 19580
APM00276.1 KY176369_p20 head protein phrog_4366 head fiber protein head and packaging -1 15078 15362
APM00284.1 KY176369_p28 portal protein phrog_145 portal protein head and packaging -1 19917 21386
APM00265.1 KY176369_p9 hypothetical protein phrog_14165 unknown function unknown function 1 9251 9580
APM00262.1 KY176369_p6 tail length tape measure protein phrog_1538 tail length tape measure protein tail -1 5993 8305
APM00277.1 KY176369_p21 major coat protein phrog_247 major head protein head and packaging -1 15423 16472
APM00307.1 KY176369_p51 hypothetical protein phrog_625 unknown function unknown function -1 29504 29779
APM00264.1 KY176369_p8 hypothetical protein phrog_313 Tail assembly chaperone tail -1 8657 9073
APM00260.1 KY176369_p4 hypothetical protein phrog_396 minor tail protein tail -1 4979 5494
APM00310.1 KY176369_p54 replicative helicase-primase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 30905 33091
APM00323.1 KY176369_p67 restriction endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 40660 40944
APM00297.1 KY176369_p41 HNH endonuclease phrog_2508 holin lysis -1 26465 26755
APM00298.1 KY176369_p42 class I holin phrog_2359 holin lysis -1 26757 27038
APM00261.1 KY176369_p5 hypothetical protein phrog_384 virion structural protein head and packaging -1 5491 5991
APM00320.1 KY176369_p64 hypothetical protein phrog_10404 unknown function unknown function 1 40107 40238
APM00312.1 KY176369_p56 DNA-binding protein phrog_3 transcriptional repressor transcription regulation -1 33681 33899
APM00267.1 KY176369_p11 hypothetical protein phrog_2452 unknown function unknown function 1 10770 11000
APM00304.1 KY176369_p48 hypothetical protein phrog_9384 unknown function unknown function -1 28818 28982
APM00257.1 KY176369_p1 tailspike protein phrog_1819 tail spike protein tail -1 1 2055
APM00317.1 KY176369_p61 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 35475 36926
APM00280.1 KY176369_p24 spanin phrog_2536 Rz-like spanin lysis -1 17371 17757
APM00293.1 KY176369_p37 hypothetical protein phrog_4684 unknown function unknown function -1 24748 24906
APM00294.1 KY176369_p38 hypothetical protein phrog_2180 unknown function unknown function -1 25103 25288
APM00268.1 KY176369_p12 major tail protein phrog_290 minor tail protein tail -1 11031 12200
APM00290.1 KY176369_p34 hypothetical protein phrog_10200 unknown function unknown function -1 24197 24343
APM00279.1 KY176369_p23 hypothetical protein phrog_5672 Rz-like spanin lysis -1 17262 17387
APM00303.1 KY176369_p47 hypothetical protein phrog_6094 unknown function unknown function -1 28325 28753
APM00285.1 KY176369_p29 terminase large subunit phrog_2 terminase large subunit head and packaging -1 21399 22670
APM00311.1 KY176369_p55 EaA protein phrog_60 unknown function unknown function 1 33088 33663
APM00273.1 KY176369_p17 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 13978 14487
APM00321.1 KY176369_p65 hypothetical protein phrog_25645 unknown function unknown function 1 40320 40514
APM00318.1 KY176369_p62 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 37163 37789
APM00306.1 KY176369_p50 hypothetical protein phrog_924 unknown function unknown function -1 29298 29507
APM00291.1 KY176369_p35 hypothetical protein phrog_1402 unknown function unknown function -1 24340 24642
APM00275.1 KY176369_p19 neck whiskers protein phrog_4069 Hoc-like head decoration head and packaging -1 14716 15066
APM00295.1 KY176369_p39 hypothetical protein phrog_7 endolysin lysis -1 25472 25954
APM00271.1 KY176369_p15 neck protein phrog_161 head closure Hc1 connector -1 13011 13370
APM00281.1 KY176369_p25 tail protein phrog_3945 Hoc-like head decoration head and packaging -1 18076 18534