| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY203335 |
Definition |
Pasteurella phage PMP-GADVASU-IND, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
46335 |
Host Name |
Pasteurella multocida |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
53.39 |
Number of singletons |
27 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APQ42464.1 | KY203335_p24 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 12083 | 13432 |
| APQ42489.1 | KY203335_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35378 | 36811 |
| APQ42456.1 | KY203335_p16 | PD-(D/E)XK nuclease superfamily protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 5157 | 6629 |
| APQ42478.1 | KY203335_p38 | hypothetical protein | phrog_8079 | neck protein | connector | 1 | 24178 | 24492 |
| APQ42490.1 | KY203335_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36858 | 37151 |
| APQ42477.1 | KY203335_p37 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 23846 | 24178 |
| APQ42449.1 | KY203335_p9 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 2856 | 3287 |
| APQ42448.1 | KY203335_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2692 | 2856 |
| APQ42465.1 | KY203335_p25 | hypothetical protein | phrog_12885 | unknown function | unknown function | 1 | 13438 | 14091 |
| APQ42463.1 | KY203335_p23 | VRR-NUC domain protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11821 | 12102 |
| APQ42480.1 | KY203335_p40 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 24885 | 25526 |
| APQ42455.1 | KY203335_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4701 | 5156 |
| APQ42474.1 | KY203335_p34 | hypothetical protein | phrog_1650 | major head protein | head and packaging | 1 | 21987 | 22952 |
| APQ42469.1 | KY203335_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16906 | 17196 |
| APQ42470.1 | KY203335_p30 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 17193 | 18836 |
| APQ42502.1 | KY203335_p62 | hypothetical protein | phrog_18815 | unknown function | unknown function | -1 | 44203 | 44748 |
| APQ42500.1 | KY203335_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43279 | 43839 |
| APQ42485.1 | KY203335_p45 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 31278 | 32132 |
| APQ42473.1 | KY203335_p33 | hypothetical protein | phrog_20430 | unknown function | unknown function | 1 | 21588 | 21959 |
| APQ42446.1 | KY203335_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2149 | 2385 |
| APQ42491.1 | KY203335_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37286 | 37393 |
| APQ42486.1 | KY203335_p46 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 32137 | 33762 |
| APQ42460.1 | KY203335_p20 | hypothetical protein | phrog_21138 | unknown function | unknown function | 1 | 7524 | 8126 |
| APQ42481.1 | KY203335_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25545 | 25649 |
| APQ42498.1 | KY203335_p58 | integrase | phrog_1 | integrase | integration and excision | -1 | 41328 | 42536 |
| APQ42497.1 | KY203335_p57 | NUMOD4 motif protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 40475 | 41050 |
| APQ42495.1 | KY203335_p55 | hypothetical protein | phrog_4026 | minor tail protein | tail | 1 | 39558 | 39971 |
| APQ42457.1 | KY203335_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6700 | 7020 |
| APQ42450.1 | KY203335_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3356 | 3481 |
| APQ42483.1 | KY203335_p43 | hypothetical protein | phrog_24583 | unknown function | unknown function | 1 | 26217 | 26564 |
| APQ42444.1 | KY203335_p4 | helix-turn-helix domain protein | singleton | unknown function | unknown function | 1 | 1771 | 1953 |
| APQ42447.1 | KY203335_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2386 | 2583 |
| APQ42443.1 | KY203335_p3 | hypothetical protein | phrog_2340 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1220 | 1753 |
| APQ42484.1 | KY203335_p44 | hypothetical protein | phrog_8927 | tail length tape measure protein | tail | 1 | 26568 | 31277 |
| APQ42461.1 | KY203335_p21 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8232 | 8876 |
| APQ42505.1 | KY203335_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45914 | 46192 |
| APQ42499.1 | KY203335_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42639 | 43241 |
| APQ42472.1 | KY203335_p32 | ATP-dependent Clp protease proteolytic subunit 1 | phrog_2976 | head maturation protease | head and packaging | 1 | 20146 | 21573 |
| APQ42492.1 | KY203335_p52 | NUMOD4 motif protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37495 | 38190 |
| APQ42476.1 | KY203335_p36 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 23376 | 23843 |
| APQ42441.1 | KY203335_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2 | 217 |
| APQ42493.1 | KY203335_p53 | N-acetylmuramoyl-L-alanine amidase | phrog_14048 | endolysin | lysis | 1 | 38265 | 39185 |
| APQ42442.1 | KY203335_p2 | hypothetical protein | phrog_36180 | unknown function | unknown function | 1 | 714 | 1223 |
| APQ42494.1 | KY203335_p54 | hypothetical protein | phrog_3428 | holin | lysis | 1 | 39186 | 39545 |
| APQ42453.1 | KY203335_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4303 | 4524 |
| APQ42468.1 | KY203335_p28 | hypothetical protein | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16595 | 16912 |
| APQ42454.1 | KY203335_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4524 | 4691 |
| APQ42459.1 | KY203335_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7293 | 7511 |
| APQ42479.1 | KY203335_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24492 | 24884 |
| APQ42503.1 | KY203335_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44845 | 45093 |
| APQ42445.1 | KY203335_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2028 | 2198 |
| APQ42501.1 | KY203335_p61 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 43836 | 44210 |
| APQ42452.1 | KY203335_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3913 | 4137 |
| APQ42496.1 | KY203335_p56 | hypothetical protein | phrog_24256 | unknown function | unknown function | 1 | 39984 | 40412 |
| APQ42504.1 | KY203335_p64 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 45123 | 45917 |
| APQ42471.1 | KY203335_p31 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 18833 | 20158 |
| APQ42466.1 | KY203335_p26 | hypothetical protein | phrog_22117 | unknown function | unknown function | 1 | 14802 | 15056 |
| APQ42451.1 | KY203335_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3482 | 3916 |
| APQ42487.1 | KY203335_p47 | hypothetical protein | phrog_8122 | minor tail protein | tail | 1 | 33769 | 34347 |
| APQ42458.1 | KY203335_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7017 | 7178 |
| APQ42475.1 | KY203335_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22962 | 23351 |
| APQ42467.1 | KY203335_p27 | HNH endonuclease | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 15779 | 16453 |
| APQ42482.1 | KY203335_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25813 | 26157 |
| APQ42488.1 | KY203335_p48 | hypothetical protein | phrog_16352 | unknown function | unknown function | 1 | 34337 | 35365 |
| APQ42462.1 | KY203335_p22 | virulence-associated protein E | phrog_256 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 9023 | 11551 |