Genomic map of Clostridium phage Clo-PEP-1 (KY206887)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY206887
Definition
Clostridium phage Clo-PEP-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
DB of origin
NUCCORE
Length
50401
Host Name
Clostridium perfringens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
69
%GC
34.11
Number of singletons
9
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APQ41966.1 KY206887_p21 hypothetical protein phrog_32052 unknown function unknown function 1 10665 11369
APQ41983.1 KY206887_p38 tail sheath protein phrog_279 tail sheath tail 1 23712 25043
APQ41997.1 KY206887_p52 bacteriocin phrog_2429 involved in bacteriocin production or immunity moron, auxiliary metabolic gene and host takeover 1 36456 36668
APQ41967.1 KY206887_p22 comE operon protein phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 11552 11971
APQ41978.1 KY206887_p33 hypothetical protein phrog_4931 head-tail adaptor connector 1 21809 22204
APQ41963.1 KY206887_p18 hypothetical protein singleton unknown function unknown function -1 9365 9616
APQ42003.1 KY206887_p58 hypothetical protein phrog_28662 unknown function unknown function -1 40803 41021
APQ41993.1 KY206887_p48 hypothetical protein phrog_521 tail protein tail 1 32118 32705
APQ41955.1 KY206887_p10 hypothetical protein singleton unknown function unknown function -1 6251 6391
APQ42014.1 KY206887_p69 hypothetical protein singleton unknown function unknown function -1 50239 50382
APQ41969.1 KY206887_p24 hypothetical protein phrog_33402 unknown function unknown function 1 12361 12978
APQ42005.1 KY206887_p60 hypothetical protein singleton unknown function unknown function -1 41469 41609
APQ41956.1 KY206887_p11 transcription termination factor singleton unknown function unknown function -1 6381 6818
APQ41999.1 KY206887_p54 hypothetical protein phrog_1129 holin lysis 1 37981 38304
APQ41981.1 KY206887_p36 hypothetical protein phrog_5756 unknown function unknown function 1 23104 23538
APQ41973.1 KY206887_p28 portal protein phrog_12 portal protein head and packaging 1 16853 18382
APQ41987.1 KY206887_p42 tail tape measure protein phrog_991 tail length tape measure protein tail 1 26158 28719
APQ41970.1 KY206887_p25 terminase small subunit phrog_2606 terminase small subunit head and packaging 1 13130 13957
APQ41968.1 KY206887_p23 hypothetical protein singleton unknown function unknown function 1 11964 12368
APQ41951.1 KY206887_p6 hypothetical protein phrog_31685 unknown function unknown function -1 3140 3265
APQ41995.1 KY206887_p50 hypothetical protein phrog_29856 unknown function unknown function 1 35696 36289
APQ41964.1 KY206887_p19 hypothetical protein phrog_36214 unknown function unknown function -1 9582 9794
APQ41953.1 KY206887_p8 DNA recombinase phrog_3123 unknown function unknown function -1 3920 5893
APQ41992.1 KY206887_p47 baseplate J protein phrog_6 baseplate wedge subunit tail 1 31067 32125
APQ41982.1 KY206887_p37 hypothetical protein phrog_1939 unknown function unknown function 1 23538 23711
APQ42009.1 KY206887_p64 hypothetical protein phrog_1485 unknown function unknown function -1 44117 44626
APQ41976.1 KY206887_p31 major capsid protein phrog_1623 virion structural protein head and packaging 1 20562 21482
APQ42007.1 KY206887_p62 hypothetical protein phrog_29569 unknown function unknown function -1 42150 42602
APQ41959.1 KY206887_p14 hypothetical protein phrog_5889 unknown function unknown function -1 8057 8599
APQ41989.1 KY206887_p44 hypothetical protein phrog_400 tail protein tail 1 29415 30401
APQ41946.1 KY206887_p1 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 2 763
APQ42002.1 KY206887_p57 hypothetical protein phrog_26256 unknown function unknown function -1 40451 40678
APQ41975.1 KY206887_p30 terminase phrog_3017 head maturation protease head and packaging 1 19281 20540
APQ42008.1 KY206887_p63 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 42633 44084
APQ41986.1 KY206887_p41 hypothetical protein phrog_10943 unknown function unknown function 1 25999 26139
APQ41996.1 KY206887_p51 hypothetical protein phrog_134 unknown function unknown function 1 36303 36452
APQ41994.1 KY206887_p49 hypothetical protein phrog_33092 unknown function unknown function 1 32720 35680
APQ41965.1 KY206887_p20 hypothetical protein singleton unknown function unknown function -1 9967 10149
APQ41988.1 KY206887_p43 portal protein phrog_380 endolysin lysis 1 28712 29413
APQ41948.1 KY206887_p3 dUTPase phrog_12184 nucleotide pyrophosphohydrolase other -1 1581 2225
APQ42004.1 KY206887_p59 hypothetical protein singleton unknown function unknown function -1 41145 41333
APQ42012.1 KY206887_p67 helicase phrog_1218 exonuclease DNA, RNA and nucleotide metabolism -1 46740 47705
APQ41950.1 KY206887_p5 hypothetical protein phrog_37003 unknown function unknown function -1 2773 3102
APQ41990.1 KY206887_p45 hypothetical protein phrog_579 unknown function unknown function 1 30401 30655
APQ41958.1 KY206887_p13 tryptophan tRNA ligase phrog_37723 unknown function unknown function -1 7635 7907
APQ41971.1 KY206887_p26 aminotransferase V phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 13960 14940
APQ42011.1 KY206887_p66 nucleotide-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 45908 46771
APQ42000.1 KY206887_p55 transcription termination factor phrog_33386 unknown function unknown function -1 38326 39684
APQ41960.1 KY206887_p15 hypothetical protein phrog_3458 unknown function unknown function -1 8611 8817
APQ41979.1 KY206887_p34 portal protein phrog_7072 head-tail adaptor connector 1 22206 22568
APQ41949.1 KY206887_p4 thymidylate kinase phrog_761 thymidylate kinase other -1 2240 2773
APQ41962.1 KY206887_p17 hypothetical protein singleton unknown function unknown function -1 9160 9396
APQ41947.1 KY206887_p2 hypothetical protein phrog_34294 unknown function unknown function -1 807 1556
APQ41961.1 KY206887_p16 DNA ligase phrog_6466 DNA ligase DNA, RNA and nucleotide metabolism -1 8814 9197
APQ41952.1 KY206887_p7 hypothetical protein phrog_28450 unknown function unknown function -1 3396 3923
APQ41984.1 KY206887_p39 hypothetical protein phrog_365 tail protein tail 1 25057 25488
APQ42010.1 KY206887_p65 hypothetical protein phrog_3724 unknown function unknown function -1 44966 45778
APQ42013.1 KY206887_p68 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 47749 50190
APQ41980.1 KY206887_p35 portal protein phrog_5 tail completion or Neck1 protein connector 1 22571 23104
APQ42001.1 KY206887_p56 hypothetical protein phrog_36397 unknown function unknown function -1 39765 40355
APQ42006.1 KY206887_p61 GGDEF domain-containing protein phrog_5594 unknown function unknown function -1 41615 42055
APQ41991.1 KY206887_p46 hypothetical protein phrog_120 baseplate wedge subunit tail 1 30660 31067
APQ41998.1 KY206887_p53 endolysin phrog_1794 amidase lysis 1 36802 37968
APQ41957.1 KY206887_p12 thymidine kinase phrog_592 thymidine kinase other -1 6966 7553
APQ41977.1 KY206887_p32 hypothetical protein phrog_37962 unknown function unknown function 1 21537 21797
APQ41972.1 KY206887_p27 terminase large subunit phrog_2 terminase large subunit head and packaging 1 14953 16407
APQ41954.1 KY206887_p9 HNH endonuclease phrog_30580 unknown function unknown function -1 5909 6166
APQ41985.1 KY206887_p40 tail assembly chaperone protein phrog_389 tail protein XkdN-like tail 1 25520 25966
APQ41974.1 KY206887_p29 hypothetical protein phrog_2468 head morphogenesis head and packaging 1 18382 19266