| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY206887 |
Definition |
Clostridium phage Clo-PEP-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae. |
DB of origin |
NUCCORE |
Length |
50401 |
Host Name |
Clostridium perfringens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
34.11 |
Number of singletons |
9 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APQ41966.1 | KY206887_p21 | hypothetical protein | phrog_32052 | unknown function | unknown function | 1 | 10665 | 11369 |
| APQ41983.1 | KY206887_p38 | tail sheath protein | phrog_279 | tail sheath | tail | 1 | 23712 | 25043 |
| APQ41997.1 | KY206887_p52 | bacteriocin | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 36456 | 36668 |
| APQ41967.1 | KY206887_p22 | comE operon protein | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 11552 | 11971 |
| APQ41978.1 | KY206887_p33 | hypothetical protein | phrog_4931 | head-tail adaptor | connector | 1 | 21809 | 22204 |
| APQ41963.1 | KY206887_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9365 | 9616 |
| APQ42003.1 | KY206887_p58 | hypothetical protein | phrog_28662 | unknown function | unknown function | -1 | 40803 | 41021 |
| APQ41993.1 | KY206887_p48 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 32118 | 32705 |
| APQ41955.1 | KY206887_p10 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6251 | 6391 |
| APQ42014.1 | KY206887_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50239 | 50382 |
| APQ41969.1 | KY206887_p24 | hypothetical protein | phrog_33402 | unknown function | unknown function | 1 | 12361 | 12978 |
| APQ42005.1 | KY206887_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41469 | 41609 |
| APQ41956.1 | KY206887_p11 | transcription termination factor | singleton | unknown function | unknown function | -1 | 6381 | 6818 |
| APQ41999.1 | KY206887_p54 | hypothetical protein | phrog_1129 | holin | lysis | 1 | 37981 | 38304 |
| APQ41981.1 | KY206887_p36 | hypothetical protein | phrog_5756 | unknown function | unknown function | 1 | 23104 | 23538 |
| APQ41973.1 | KY206887_p28 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 16853 | 18382 |
| APQ41987.1 | KY206887_p42 | tail tape measure protein | phrog_991 | tail length tape measure protein | tail | 1 | 26158 | 28719 |
| APQ41970.1 | KY206887_p25 | terminase small subunit | phrog_2606 | terminase small subunit | head and packaging | 1 | 13130 | 13957 |
| APQ41968.1 | KY206887_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11964 | 12368 |
| APQ41951.1 | KY206887_p6 | hypothetical protein | phrog_31685 | unknown function | unknown function | -1 | 3140 | 3265 |
| APQ41995.1 | KY206887_p50 | hypothetical protein | phrog_29856 | unknown function | unknown function | 1 | 35696 | 36289 |
| APQ41964.1 | KY206887_p19 | hypothetical protein | phrog_36214 | unknown function | unknown function | -1 | 9582 | 9794 |
| APQ41953.1 | KY206887_p8 | DNA recombinase | phrog_3123 | unknown function | unknown function | -1 | 3920 | 5893 |
| APQ41992.1 | KY206887_p47 | baseplate J protein | phrog_6 | baseplate wedge subunit | tail | 1 | 31067 | 32125 |
| APQ41982.1 | KY206887_p37 | hypothetical protein | phrog_1939 | unknown function | unknown function | 1 | 23538 | 23711 |
| APQ42009.1 | KY206887_p64 | hypothetical protein | phrog_1485 | unknown function | unknown function | -1 | 44117 | 44626 |
| APQ41976.1 | KY206887_p31 | major capsid protein | phrog_1623 | virion structural protein | head and packaging | 1 | 20562 | 21482 |
| APQ42007.1 | KY206887_p62 | hypothetical protein | phrog_29569 | unknown function | unknown function | -1 | 42150 | 42602 |
| APQ41959.1 | KY206887_p14 | hypothetical protein | phrog_5889 | unknown function | unknown function | -1 | 8057 | 8599 |
| APQ41989.1 | KY206887_p44 | hypothetical protein | phrog_400 | tail protein | tail | 1 | 29415 | 30401 |
| APQ41946.1 | KY206887_p1 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 2 | 763 |
| APQ42002.1 | KY206887_p57 | hypothetical protein | phrog_26256 | unknown function | unknown function | -1 | 40451 | 40678 |
| APQ41975.1 | KY206887_p30 | terminase | phrog_3017 | head maturation protease | head and packaging | 1 | 19281 | 20540 |
| APQ42008.1 | KY206887_p63 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 42633 | 44084 |
| APQ41986.1 | KY206887_p41 | hypothetical protein | phrog_10943 | unknown function | unknown function | 1 | 25999 | 26139 |
| APQ41996.1 | KY206887_p51 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 36303 | 36452 |
| APQ41994.1 | KY206887_p49 | hypothetical protein | phrog_33092 | unknown function | unknown function | 1 | 32720 | 35680 |
| APQ41965.1 | KY206887_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9967 | 10149 |
| APQ41988.1 | KY206887_p43 | portal protein | phrog_380 | endolysin | lysis | 1 | 28712 | 29413 |
| APQ41948.1 | KY206887_p3 | dUTPase | phrog_12184 | nucleotide pyrophosphohydrolase | other | -1 | 1581 | 2225 |
| APQ42004.1 | KY206887_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41145 | 41333 |
| APQ42012.1 | KY206887_p67 | helicase | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 46740 | 47705 |
| APQ41950.1 | KY206887_p5 | hypothetical protein | phrog_37003 | unknown function | unknown function | -1 | 2773 | 3102 |
| APQ41990.1 | KY206887_p45 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 30401 | 30655 |
| APQ41958.1 | KY206887_p13 | tryptophan tRNA ligase | phrog_37723 | unknown function | unknown function | -1 | 7635 | 7907 |
| APQ41971.1 | KY206887_p26 | aminotransferase V | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 13960 | 14940 |
| APQ42011.1 | KY206887_p66 | nucleotide-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 45908 | 46771 |
| APQ42000.1 | KY206887_p55 | transcription termination factor | phrog_33386 | unknown function | unknown function | -1 | 38326 | 39684 |
| APQ41960.1 | KY206887_p15 | hypothetical protein | phrog_3458 | unknown function | unknown function | -1 | 8611 | 8817 |
| APQ41979.1 | KY206887_p34 | portal protein | phrog_7072 | head-tail adaptor | connector | 1 | 22206 | 22568 |
| APQ41949.1 | KY206887_p4 | thymidylate kinase | phrog_761 | thymidylate kinase | other | -1 | 2240 | 2773 |
| APQ41962.1 | KY206887_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9160 | 9396 |
| APQ41947.1 | KY206887_p2 | hypothetical protein | phrog_34294 | unknown function | unknown function | -1 | 807 | 1556 |
| APQ41961.1 | KY206887_p16 | DNA ligase | phrog_6466 | DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 8814 | 9197 |
| APQ41952.1 | KY206887_p7 | hypothetical protein | phrog_28450 | unknown function | unknown function | -1 | 3396 | 3923 |
| APQ41984.1 | KY206887_p39 | hypothetical protein | phrog_365 | tail protein | tail | 1 | 25057 | 25488 |
| APQ42010.1 | KY206887_p65 | hypothetical protein | phrog_3724 | unknown function | unknown function | -1 | 44966 | 45778 |
| APQ42013.1 | KY206887_p68 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 47749 | 50190 |
| APQ41980.1 | KY206887_p35 | portal protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 22571 | 23104 |
| APQ42001.1 | KY206887_p56 | hypothetical protein | phrog_36397 | unknown function | unknown function | -1 | 39765 | 40355 |
| APQ42006.1 | KY206887_p61 | GGDEF domain-containing protein | phrog_5594 | unknown function | unknown function | -1 | 41615 | 42055 |
| APQ41991.1 | KY206887_p46 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 30660 | 31067 |
| APQ41998.1 | KY206887_p53 | endolysin | phrog_1794 | amidase | lysis | 1 | 36802 | 37968 |
| APQ41957.1 | KY206887_p12 | thymidine kinase | phrog_592 | thymidine kinase | other | -1 | 6966 | 7553 |
| APQ41977.1 | KY206887_p32 | hypothetical protein | phrog_37962 | unknown function | unknown function | 1 | 21537 | 21797 |
| APQ41972.1 | KY206887_p27 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 14953 | 16407 |
| APQ41954.1 | KY206887_p9 | HNH endonuclease | phrog_30580 | unknown function | unknown function | -1 | 5909 | 6166 |
| APQ41985.1 | KY206887_p40 | tail assembly chaperone protein | phrog_389 | tail protein XkdN-like | tail | 1 | 25520 | 25966 |
| APQ41974.1 | KY206887_p29 | hypothetical protein | phrog_2468 | head morphogenesis | head and packaging | 1 | 18382 | 19266 |